Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0201 ATGCAACAATCGAACGGCTCCGATTCCTCGTTGCAGTCGCAGTCCGCTGAGCAGAACGTTCCGCGGCAGCCGGCAGCGTCTCCGGCGGTGGCGCGGCCGCAGCAGTGGCTTCCGATGCAGTATCCGACGGCCATGGTAATGCCGCACCACATGCTGCCTCCGCAGCACTACGCGCCGCCGTACGTGCCTTTCCACCACCACCAGTACGCGCCGCCGCACGTCCCGCACCAGCACCAGAACGGATCCAGCGGCGAGAACAAAACCGTCTGGATCGGGGATTTGCATCACTGGATGGACGAGAATTATCTCCATCGCTGTTTCGCCTCCACCGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCAAACTGGCCTATCAGAGGGTTATGGATTTGTGGAGTTCTATTCACATGCTACAGCTGAGAAAGTTCTGCAAAACTATGCTGGAATTTTGATGCCCAATACAGAGCAAGCATTCCGTCTAAACTGGGCATCATTTAGCACAGGAGACAAGGGTTCAGATAATGTTCCTGACCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACGGATAGTTTGTTGCATGAAACTTTTGCTAGTGTGTTTCCTTCTGTTAAAGCTGCAAAAGTTGTTTTCGATGCCAATACTGGCCGTTCAAAGGGCTATGGTTTCGTCAGGTTTGGCGATGACAATGAGAGATCCCAGGCCATGACTCAGATGAATGGTGTTTACTGTTCCAGCAGGCCTATGCGTATTGGTGCTGCAACTCCAAGAAAATCATCTGGCCATCAACAGGGAGGTCAGTCAAATGGCACATCCAGCCAATCTGAAGCAGATTCTACCAACACAACAATTTTTGTTGGAGGACTGGACCCTAATGTTTCAGATGAGGACCTCAGACAGCCATTCTCCCAGTACGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGGTGTGGTTTTGTCCAGTTCGCAAACAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAACGGGACAACAATTGGAAAGCAGACAGTCCGACTTTCTTGGGGCCGTAATCCAGCAAATAAGCAGTTTAGAATGGATTTCGGCAACCCCTGGACTGGGGCATATTATGGGGCCCCTATTTATGATGGTTATGGTTACGCATTGCCTCCTCGTCATGATCCCAGCATATATGCTGCTGCTTATGGAGCTTACCCTCTTTATGGTGCCCACCAACAACAAGTAAGCTAA 1248 0.4976 MQQSNGSDSSLQSQSAEQNVPRQPAASPAVARPQQWLPMQYPTAMVMPHHMLPPQHYAPPYVPFHHHQYAPPHVPHQHQNGSSGENKTVWIGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGILMPNTEQAFRLNWASFSTGDKGSDNVPDLSIFVGDLAADVTDSLLHETFASVFPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGGQSNGTSSQSEADSTNTTIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDFGNPWTGAYYGAPIYDGYGYALPPRHDPSIYAAAYGAYPLYGAHQQQVS* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0201 415 CDD RRM2_SECp43_like 179 258 - -
Pvu1g0201 415 SMART rrm1_1 286 353 IPR000504 GO:0003723
Pvu1g0201 415 SMART rrm1_1 88 163 IPR000504 GO:0003723
Pvu1g0201 415 SMART rrm1_1 181 255 IPR000504 GO:0003723
Pvu1g0201 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 251 IPR000504 GO:0003723
Pvu1g0201 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 287 350 IPR000504 GO:0003723
Pvu1g0201 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 156 IPR000504 GO:0003723
Pvu1g0201 415 Gene3D - 179 255 IPR012677 -
Pvu1g0201 415 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 28 414 - -
Pvu1g0201 415 CDD RRM1_SECp43_like 88 168 - -
Pvu1g0201 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 167 IPR000504 GO:0003723
Pvu1g0201 415 Gene3D - 261 363 IPR012677 -
Pvu1g0201 415 SUPERFAMILY RNA-binding domain, RBD 53 165 IPR035979 GO:0003676
Pvu1g0201 415 MobiDBLite consensus disorder prediction 1 31 - -
Pvu1g0201 415 MobiDBLite consensus disorder prediction 255 293 - -
Pvu1g0201 415 SUPERFAMILY RNA-binding domain, RBD 179 357 IPR035979 GO:0003676
Pvu1g0201 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 259 IPR000504 GO:0003723
Pvu1g0201 415 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 28 414 - -
Pvu1g0201 415 MobiDBLite consensus disorder prediction 1 22 - -
Pvu1g0201 415 MobiDBLite consensus disorder prediction 260 291 - -
Pvu1g0201 415 CDD RRM3_NGR1_NAM8_like 284 355 - -
Pvu1g0201 415 Gene3D - 86 166 IPR012677 -
Pvu1g0201 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 285 357 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0201 Pvu-Chr1 1679134 1683610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0201 61 365 Eukaryotic Initiation Factors Gene Family AT4G34110 26.923 1.01e-30 122
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0201 1 1679134 1683610 Pvu1g0201 1 1679134 1683610 ECH
Pvu1g0201 1 1679134 1683610 Pvu9g0652 9 11006045 11012047 PCT