Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0197 ATTATGAAAATGAGAGGAACCAAACAATGCTCTTCTTCATCTTCTCATTCTTCTACTTCCGAGTTCAATCCTAGTAATAATGATCATAATAACAATACTTGTGTTAGAAAAAAGGGGGCATGGGGTGTGGAAGAAGATAGGGTTCTCACTGGGCTTGTGGAGGCCCATGGGCCGAGAAACTGGGCCTTGATAAGCCGACACGTAAAGGGCCGGTCTGGGAAGTCGTGCAGGCTTCGGTGGTGCAACCAGCTCAGTCCCGCTGTGGAGCACCGACCCTTCACCACGCGCGAGAACGCGGTTATCTTGCACGCGCACGATCGGTTAGGGAACAAGTGGGCCACCATTGCGAGAATGCTTCCGGGCCGGACCGATAACGCCGTTAAGAATCACTGGAACGCCACGCTCAAGCGCGTGCCCTCCCAACGATGTCGTTTTGGAGATGAACCTGGCTGCGGCGGTTCGACGGCGGGGTTTCGGGAAGTGAGGGAATGTGTTTCTTACTCGTTTTCCGACAACTTTGGCTCTAACAAGGAATTACCATTTTAA 546 0.5201 IMKMRGTKQCSSSSSHSSTSEFNPSNNDHNNNTCVRKKGAWGVEEDRVLTGLVEAHGPRNWALISRHVKGRSGKSCRLRWCNQLSPAVEHRPFTTRENAVILHAHDRLGNKWATIARMLPGRTDNAVKNHWNATLKRVPSQRCRFGDEPGCGGSTAGFREVRECVSYSFSDNFGSNKELPF* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0197 181 PANTHER MYB PROTEIN-RELATED 4 140 - -
Pvu1g0197 181 Gene3D - 37 89 - -
Pvu1g0197 181 Gene3D - 92 138 - -
Pvu1g0197 181 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 88 IPR017930 -
Pvu1g0197 181 ProSiteProfiles Myb-like domain profile. 37 84 IPR001005 -
Pvu1g0197 181 CDD SANT 92 135 IPR001005 -
Pvu1g0197 181 SMART sant 37 86 IPR001005 -
Pvu1g0197 181 SMART sant 89 137 IPR001005 -
Pvu1g0197 181 MobiDBLite consensus disorder prediction 1 33 - -
Pvu1g0197 181 Pfam Myb-like DNA-binding domain 38 84 IPR001005 -
Pvu1g0197 181 Pfam Myb-like DNA-binding domain 92 132 IPR001005 -
Pvu1g0197 181 SUPERFAMILY Homeodomain-like 36 131 IPR009057 -
Pvu1g0197 181 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 139 IPR017930 -
Pvu1g0197 181 CDD SANT 40 82 IPR001005 -
Pvu1g0197 181 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 4 140 - -
Pvu1g0197 181 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0197 Pvu-Chr1 1641533 1642109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0197 36 153 MYB Transcription Factor Family AT4G37260 63.636 2.06e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu1g0197 Myb_DNA-binding 2.5e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0197 1 1641533 1642109 Pvu1g0197 1 1641533 1642109 ECH
Pvu1g0197 1 1641533 1642109 Pvu9g0647 9 10947123 10947797 PCT