Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0190 ATGGGGTGTGACTGTGGGGGGAAGTTAAATTTGAGAAAGCCTCATTTTTATGAGGTTTTTTCCTCTGCCTTCAGCTCTCACAGACTGAAAATTCCGGATGGGTTTGTGTGTCGCATGGAGGGAAGGACGTATGGGTCACTTTCATTGATTGGTCCCAGTGGAAATGTATGGACAGTGCAATTACTTAAGCAGGACAATGATCTTTTCTTCCATCATGGATGGTCGTCATTTGTGGTGGATCATAGTCTAGAATGTGGTGACCTTTTGGTTTTCAGATACGAAGGTCACTTGCACTTTACCGTTCAAGTATTTGATAAGGATGCATGTGAGAAAGAGGCAGCATTTATTTCTGAATGCAGTCAAAGTTCGAGTGACTTTGAGGCAATTACGGGACAGAAAAGAGGTAAAGATTTATTGCGTTATGAGGTAGTAAGACCGATTAGAATGTTCAGAGAGACTGAAGAAACCTCTAAAGCGTGTTTGGCTAATGATGCCCTTGTGCCTTTTCACACGGACAATAGAAATGAAGAGGCTGCCATCATGTATAGAAGTGGAAAGGAAGATGGTAGTTATTTTCTAGGCGGAGTTTCATTATCTAACGTATCAGCGCAAGACGAGAAAAAAGTTGCTCAGTCATTTACTTCAGATTATCCGTATTTTGTTAGAATCATGAAAAGCTTCAATGTCAGTGGTTCATATACTCTGAATATTCCATATCAGTTTTCAATGGCACACCTTCCCAATTGCAAGATAAAGATTATTCTTCATAATTTGAAAGGAGAACATTGGACTGTTAATTCTGTGCCAACAACTAGAGTACATACTAGTCACACACTTTGTGGAGGATGGATGGCTTTTGTTCGTGGTAATAGCATTACGGTTGGAGATATCTGTATTTTTGAGCTTGTGCACAAGTGTGAATTACGTGTTCACATTGCTGGGGTTGGAAATGATGGGTTAGACTGCCAGGTTGGAAGAGTGAATGCAGGACATGTTGGACCTCCCAGATATATGCCAACTAATGCTAAAGTAAACTCAAAGTGCATAAGAAAAGTTGATGTATCAAATAAAAAATGGCCCAAGATTGGTCAAGAAACTGTTTTATCCATTGACCTTAAGAAATCTGGTAGAGCTTCAAATGCTTCTAAGCACATGGGTCTTTGCCCTCAGTCCAAAGTTGCCCATAAAAAGCTGGCTACTCCGAGAAGACATCGGGTCGAAGATGAGCTAAGCTCACAGGCTAAAGCTGGTTTGAGAATGTTGTTTGCATTGGATGAACAAAGAGTAGCTCAAGCTTTTAGTTCCCCTTTTCCTAGTTTTGTTAAAATCATGAAGAAGTTCAATGTCAGTGGGTCATACACTTTGAAAATCCCATACCAGTTCTCAGCTGCACATCTCCCAACTTACAAAACTGAAGTTATACTACGTAATTCAAGAGGTGAATGTTGGACTGTGAACTCTGTCCCAGATGCAAAAGGCCGAACAGTTCACACCTTTTGTGGGGGATGGATGGCCTTTGTTCGTGACAATGACATCAATTTTGGAGACACATGCATTTTTGAACTGGTTACTCAATCTGAGATGCAGGTGTATATATCTGGGGTCGGAAAGGAAGGGCCTGATCATCAAAATGGGCACATAAAACTTGATAGATTAGCTAACCTTCCATCTACTTGCTAA 1680 0.4071 MGCDCGGKLNLRKPHFYEVFSSAFSSHRLKIPDGFVCRMEGRTYGSLSLIGPSGNVWTVQLLKQDNDLFFHHGWSSFVVDHSLECGDLLVFRYEGHLHFTVQVFDKDACEKEAAFISECSQSSSDFEAITGQKRGKDLLRYEVVRPIRMFRETEETSKACLANDALVPFHTDNRNEEAAIMYRSGKEDGSYFLGGVSLSNVSAQDEKKVAQSFTSDYPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNSITVGDICIFELVHKCELRVHIAGVGNDGLDCQVGRVNAGHVGPPRYMPTNAKVNSKCIRKVDVSNKKWPKIGQETVLSIDLKKSGRASNASKHMGLCPQSKVAHKKLATPRRHRVEDELSSQAKAGLRMLFALDEQRVAQAFSSPFPSFVKIMKKFNVSGSYTLKIPYQFSAAHLPTYKTEVILRNSRGECWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVTQSEMQVYISGVGKEGPDHQNGHIKLDRLANLPSTC* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0190 559 CDD B3_DNA 218 312 IPR003340 GO:0003677
Pvu1g0190 559 SUPERFAMILY DNA-binding pseudobarrel domain 433 534 IPR015300 -
Pvu1g0190 559 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Pvu1g0190 559 ProSiteProfiles B3 DNA-binding domain profile. 220 316 IPR003340 GO:0003677
Pvu1g0190 559 SUPERFAMILY DNA-binding pseudobarrel domain 19 112 IPR015300 -
Pvu1g0190 559 Pfam B3 DNA binding domain 20 106 IPR003340 GO:0003677
Pvu1g0190 559 Pfam B3 DNA binding domain 440 529 IPR003340 GO:0003677
Pvu1g0190 559 Pfam B3 DNA binding domain 220 312 IPR003340 GO:0003677
Pvu1g0190 559 SUPERFAMILY DNA-binding pseudobarrel domain 213 314 IPR015300 -
Pvu1g0190 559 PANTHER B3 DOMAIN-CONTAINING 415 553 - -
Pvu1g0190 559 PANTHER B3 DOMAIN-CONTAINING 1 414 - -
Pvu1g0190 559 SMART B3_2 220 316 IPR003340 GO:0003677
Pvu1g0190 559 SMART B3_2 20 107 IPR003340 GO:0003677
Pvu1g0190 559 SMART B3_2 440 536 IPR003340 GO:0003677
Pvu1g0190 559 Gene3D - 425 535 IPR015300 -
Pvu1g0190 559 Gene3D - 200 315 IPR015300 -
Pvu1g0190 559 CDD B3_DNA 14 105 IPR003340 GO:0003677
Pvu1g0190 559 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 415 553 - -
Pvu1g0190 559 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 1 414 - -
Pvu1g0190 559 CDD B3_DNA 438 532 IPR003340 GO:0003677
Pvu1g0190 559 ProSiteProfiles B3 DNA-binding domain profile. 440 536 IPR003340 GO:0003677
Pvu1g0190 559 Gene3D - 8 109 IPR015300 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu1g0190 B3 3e-13 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0190 1 1587679 1591663 Pvu1g0190 1 1587679 1591663 ECH