Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0188 ATGTTCACCAATTCACACACGTTAATGCAAACTTTATTGTCGGAGCCAGACCTCTCCTTGAACATAAGTCCTCCCTCCGTTTCAGATATTTGTGAGGTGAAGGAACTGGGGGGCTTCAGCAAAGCGATTCACAACGACATGTGCTCAACTTCTGATTCCGGGAGCAGCGGAGGAAGTGATTTGAGCCACGAGTTCCACAACCTTGGTCACCACCGTGAGCCGTCGTTGAAGTTAGGCTTTGGAACCGCGGATTTGAATCCTCGCCGTCAGGTTCAAGGTGACACGAGAAGCTTCAACCACCACCACCACCACCACCTTCAACCTCACATCTATGGCCGCGATTTCAAACGAACTGCGAGAGTCGTCAATGGCGTCAAAAGAAGCGTCAGGGCTCCCAGGATGAGATGGACCACCACCCTCCATGCCCATTTTGTTCACGCGGTTCAGCTTCTTGGCGGCCATGAAAGAGCAACTCCGAAGTCTGTGTTAGAGTTAATGAATGTTAAGGATCTAACCCTAGCACACGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGACAAAGGCAGCACAGGTCATGATATTGGACTATTGAATCCAAGGCCAGGGATTAACATACTTCATCTGCATGCACCCTCACCCAATCTACCACACCCCATTCAAACTTCCCACAGGACACAGATAGAGACAAAAACAAACAATAGTAGACAAGATGCAGAGATGGGTTTGACGTGTTCTGACCTCAAGGGAAGTGAAAGCATGGTGAATAATGGTCTCAGTTATGGTGTTGGAGGCTTGGATTCCACCACTTTGTCACTTTCCGAGGGAATGCTTGACCTTGAATTCAGCCTTGGAAGACCCATTTGGCAAAAAGACCACCCAGAATCATCCAGAGAGATAACTCTTTTAAAGTGTTGA 927 0.48 MFTNSHTLMQTLLSEPDLSLNISPPSVSDICEVKELGGFSKAIHNDMCSTSDSGSSGGSDLSHEFHNLGHHREPSLKLGFGTADLNPRRQVQGDTRSFNHHHHHHLQPHIYGRDFKRTARVVNGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGSTGHDIGLLNPRPGINILHLHAPSPNLPHPIQTSHRTQIETKTNNSRQDAEMGLTCSDLKGSESMVNNGLSYGVGGLDSTTLSLSEGMLDLEFSLGRPIWQKDHPESSREITLLKC* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0188 308 Gene3D - 131 188 - -
Pvu1g0188 308 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 308 - -
Pvu1g0188 308 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 308 IPR044847 GO:0000976|GO:0006355|GO:0010158
Pvu1g0188 308 Pfam Myb-like DNA-binding domain 133 184 IPR001005 -
Pvu1g0188 308 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 132 185 IPR006447 GO:0003677
Pvu1g0188 308 SUPERFAMILY Homeodomain-like 129 186 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0188 Pvu-Chr1 1561647 1565391 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu1g0188 Myb_DNA-binding 1.3e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0188 1 1561647 1565391 Pvu1g0188 1 1561647 1565391 ECH
Pvu1g0188 1 1561647 1565391 Pvu9g0637 9 10871451 10875543 PCT