Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0184 ATGTTTGCTGAAAGCTTTCCACGAACACCCAACATGCAATCGGAGCCCAGAATGTCCGCCACCGATGCTTTAACCGACGACGAGTTCACAATGCGCAGCAGCAGCTCCGCGTCGCCCATGAGTCCTTATTACTACGAGCAGGGAAGGCTCAGCGGCGAGGGCTCTCCCATGATGATGTCGCCGTGGAACCAGACCGCCAGCTCGCCGTTTTCCAAGCCGCAGTGGTCGCAGAGCGACGACGGCGGGAACTTGCCGCAGAACGCGCTGGTGGGTTCTCTTGTCCGCGAGGAGGGACACATATACTCGCTGGCGGCTTCCGGCGACCTCCTGTACACGGGCTCCGACAGCAAGAACATCCGTGTTTGGAAGAACCTTAAGGAGTATTCTGGGTTCAAATCGAACAGCGGATTGGTCAAAACCATAATTCTGTCGGGGCAGAAAATCTTCACGGGGCACCAGGACGGCAAAATCCGCGTCTGGAAGGTGTCGCCGAAGAACCCCAGCGTGCACAAACGCGCCGGCACGTTGCCCACGCTTAAAGACATCTTCAAGAGCTCCATTAAACCCAGCAACTACGTCGAGGTTCGGCGACACAAAACGGCGTTATGGATAAGGCATTCGGACGCCGTTTCGTGTTTGAGTCTCTCTGATAACAAGTTGTATCTATACTCTGCGTCGTGGGACAGAACAATCAAGGTGTGGAGGATCGCCGACTCCAAATGCCTCGAGTCCATCCACGCGCACGACGACGCCGTCAACGCGGTGGTGTGCGGCGAGGATGCGGCGATGTTTTCGGGGTCGGCGGACGGCACGGTGAAGGTGTGGCGGCGGGAGGTGCGGGGGAAGGGGCTGAAGCACGCGGCGGTGAAAACGCTGCTGAAGCAGGAGTGCGCGGTGACGGCGCTGGCGGTGGACGCGGATGCTTCGATGTTGTACAGCGGCGCCTCCGATGGGCTCGTGAACTTCTGGGAGCGAGAGAAAGGCTACGTGCACGGCGGCGTGCTCAAGGGCCACAAGCTCGCCGTGCTGTGCCTCATCTCCGCGGGGGCGTTGGTGTTCAGCGGGTCCGCAGATAAGACTATATGCGTGTGGAGAAGAGACGGTCTGATTCACACGTGCGTGTCTGTTCTGACGGGTCACGACGGTCCCGTGAAATGCCTGGCCGTGGAGGAGGACCGCGAAGCTGCCGCCGCCGCGAGAGACCGGCGTTGGATTTTGTACAGTGGCAGTTTGGACAAATCGGTTAAGGTTTGGAGCGTGTCGGAATCGATGAACAATAATCAGGGGATGCATCAGCGCATGGGTTCTGATGCGGACTCGTTGCCCTCCGTCTCCGACAGTAGTGTGTCTATGGGCTGGGCCAACGGGAGAAACTGA 1377 0.5897 MFAESFPRTPNMQSEPRMSATDALTDDEFTMRSSSSASPMSPYYYEQGRLSGEGSPMMMSPWNQTASSPFSKPQWSQSDDGGNLPQNALVGSLVREEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEYSGFKSNSGLVKTIILSGQKIFTGHQDGKIRVWKVSPKNPSVHKRAGTLPTLKDIFKSSIKPSNYVEVRRHKTALWIRHSDAVSCLSLSDNKLYLYSASWDRTIKVWRIADSKCLESIHAHDDAVNAVVCGEDAAMFSGSADGTVKVWRREVRGKGLKHAAVKTLLKQECAVTALAVDADASMLYSGASDGLVNFWEREKGYVHGGVLKGHKLAVLCLISAGALVFSGSADKTICVWRRDGLIHTCVSVLTGHDGPVKCLAVEEDREAAAAARDRRWILYSGSLDKSVKVWSVSESMNNNQGMHQRMGSDADSLPSVSDSSVSMGWANGRN* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0184 458 PANTHER PROTEIN JINGUBANG 10 434 - -
Pvu1g0184 458 SMART WD40_4 370 419 IPR001680 GO:0005515
Pvu1g0184 458 SMART WD40_4 196 235 IPR001680 GO:0005515
Pvu1g0184 458 SMART WD40_4 86 123 IPR001680 GO:0005515
Pvu1g0184 458 SMART WD40_4 328 365 IPR001680 GO:0005515
Pvu1g0184 458 SMART WD40_4 238 276 IPR001680 GO:0005515
Pvu1g0184 458 SMART WD40_4 285 324 IPR001680 GO:0005515
Pvu1g0184 458 SMART WD40_4 124 161 IPR001680 GO:0005515
Pvu1g0184 458 MobiDBLite consensus disorder prediction 7 42 - -
Pvu1g0184 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 324 IPR001680 GO:0005515
Pvu1g0184 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 275 IPR001680 GO:0005515
Pvu1g0184 458 Gene3D - 285 456 IPR015943 GO:0005515
Pvu1g0184 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 244 IPR001680 GO:0005515
Pvu1g0184 458 MobiDBLite consensus disorder prediction 1 82 - -
Pvu1g0184 458 CDD WD40 97 419 - -
Pvu1g0184 458 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 203 236 - -
Pvu1g0184 458 MobiDBLite consensus disorder prediction 426 458 - -
Pvu1g0184 458 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 434 IPR045182 -
Pvu1g0184 458 MobiDBLite consensus disorder prediction 57 82 - -
Pvu1g0184 458 Gene3D - 198 284 IPR015943 GO:0005515
Pvu1g0184 458 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 245 275 - -
Pvu1g0184 458 Pfam WD domain, G-beta repeat 97 123 IPR001680 GO:0005515
Pvu1g0184 458 Pfam WD domain, G-beta repeat 297 323 IPR001680 GO:0005515
Pvu1g0184 458 Pfam WD domain, G-beta repeat 124 161 IPR001680 GO:0005515
Pvu1g0184 458 Pfam WD domain, G-beta repeat 372 419 IPR001680 GO:0005515
Pvu1g0184 458 Pfam WD domain, G-beta repeat 333 364 IPR001680 GO:0005515
Pvu1g0184 458 Pfam WD domain, G-beta repeat 206 234 IPR001680 GO:0005515
Pvu1g0184 458 Pfam WD domain, G-beta repeat 240 275 IPR001680 GO:0005515
Pvu1g0184 458 PRINTS G protein beta WD-40 repeat signature 222 236 IPR020472 -
Pvu1g0184 458 PRINTS G protein beta WD-40 repeat signature 263 277 IPR020472 -
Pvu1g0184 458 PRINTS G protein beta WD-40 repeat signature 406 420 IPR020472 -
Pvu1g0184 458 Gene3D - 75 197 IPR015943 GO:0005515
Pvu1g0184 458 SUPERFAMILY WD40 repeat-like 88 422 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0184 Pvu-Chr1 1530981 1533040 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0525 9 9594653 9598970 Pvu1g0184 1 1530981 1533040 PCT