Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0176 ATGGGTTGGCTTAGCAGAATTTTTAAAGGGTCTGAGCAGAAGATTTCGGAGGGGCATTATAGTAAAGAGGATGCTGGTTATTATCTGCCGTCGACTTCTGGGGATGTTTGGAACCAGAACGAGAATGAGGATATAGATCGTGCTATTGCACTGTCTCTGGCCGAAGAGAGCGAGAAAACAAACATTGTAAATGACAACAGATCACAGTTAGAAGAAGATGAACAACTTGCCAGAGCTTTAGAAGAAAGTCTAAACGTGGAGTCTCCTCCCAGATATGGAAATGAAAATGCGTATCAACCAATTCAGTATTTCCCCATGGGGTCCAGGATTTGTGCTGGCTGCTATATTGAGATTGGTTACGGGCGATATCTTAATTGCTTGAACGCATTCTGGCATCCTGAATGCTTCCGCTGCCGAGCTTGCAACCTACCAATCTCTGATTATGAGTTCTCCACATCTGGGAATTACCCTTACCATAAATCATGTTATAAGGAAAGCTACCACCCGAAATGTGATGTCTGCAAGCACTTTATTCCAACAAATCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGGTTCAGAAATATTGCCCTTCTCATGAACATGACTGTACTCCACGATGTTGCAGTTGTGAGCGAATGGAGTCGCAAGAGGCAGGATATATTGCTCATAAGGATGGCCGGAAGCTCTGCTTAGAGTGTCTAGATTCTGCTATCATGGATACAAATGAATGCCAACCCCTTCATGCTGATATACAAAGATTTTATGAAAGCCTAAATATGAAACTGGACCAGCAAATTCCACTACTATTGGTTGAAAGACAAGCACTGAATGAAGCAAGAGAGGGAGATAAGAATGGACACTATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCCGAGGAGCTCAGCACTTTCTCGAGAAGACCAAGATTTGGGTCAGGAAATGGAGCAATGGACATGAGAGCACAGCCATACAGGATGACTCCACATTGTGATGTGACAGCTATTCTTATTTTATATGGTCTTCCAAGATTGCTTACTGGGTCGATCCTAGCCCATGAGATGATGCATGCCTGGCTTCGACTTAAAGGTTATAGGACTCTAAGTCAAGATGTTGAAGAAGGTATCTGTCAGGTTTTGGCTCATATGTGGTTGGAGTCTGAACTTACTTCTGCATCAGCATCATCCTCATCTGCATCACACTCATCTAAAAAAGGTAAAAGACCTCAGTTTGAGAGGAAGCTTGGGGAGTTCTTCAAGCACCAGATTGAATCAGACATTTCCCCTGTTTATGGAGATGGGTTTAGGGCAGGTCAAAAAGCAGTGCGTAAATATGGTCTACAAAAGACCCTTCACCACATCAGGATGACGGGGACTTTTCCATTTTAA 1398 0.4363 MGWLSRIFKGSEQKISEGHYSKEDAGYYLPSTSGDVWNQNENEDIDRAIALSLAEESEKTNIVNDNRSQLEEDEQLARALEESLNVESPPRYGNENAYQPIQYFPMGSRICAGCYIEIGYGRYLNCLNAFWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWVQKYCPSHEHDCTPRCCSCERMESQEAGYIAHKDGRKLCLECLDSAIMDTNECQPLHADIQRFYESLNMKLDQQIPLLLVERQALNEAREGDKNGHYHMPETRGLCLSEELSTFSRRPRFGSGNGAMDMRAQPYRMTPHCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLSQDVEEGICQVLAHMWLESELTSASASSSSASHSSKKGKRPQFERKLGEFFKHQIESDISPVYGDGFRAGQKAVRKYGLQKTLHHIRMTGTFPF* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0176 465 ProSiteProfiles LIM domain profile. 109 169 IPR001781 -
Pvu1g0176 465 Pfam Protein DA1 261 460 IPR022087 -
Pvu1g0176 465 Pfam LIM domain 111 165 IPR001781 -
Pvu1g0176 465 PANTHER PROTEIN DA1-RELATED 2 1 465 IPR045218 -
Pvu1g0176 465 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 137 192 - -
Pvu1g0176 465 SMART lim_4 110 162 IPR001781 -
Pvu1g0176 465 Coils Coil 63 83 - -
Pvu1g0176 465 SMART uim 40 59 IPR003903 -
Pvu1g0176 465 SMART uim 71 90 IPR003903 -
Pvu1g0176 465 CDD LIM_DA1 111 163 - -
Pvu1g0176 465 Gene3D Cysteine Rich Protein 105 183 - -
Pvu1g0176 465 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 71 90 IPR003903 -
Pvu1g0176 465 Pfam Ubiquitin interaction motif 71 84 IPR003903 -
Pvu1g0176 465 Pfam Ubiquitin interaction motif 41 55 IPR003903 -
Pvu1g0176 465 PANTHER PROTEIN DA1-LIKE 1 465 - -
Pvu1g0176 465 ProSitePatterns LIM zinc-binding domain signature. 111 145 IPR001781 -
Pvu1g0176 465 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 40 59 IPR003903 -
Pvu1g0176 465 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 104 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0176 Pvu-Chr1 1429648 1435650 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu1g0176 DA1-like 6.8e-94 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0176 1 1429648 1435650 Pvu1g0176 1 1429648 1435650 ECH