Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu1g0171 | ATGGCCCTAAACCCAAACTCAAAAGTCTTTGCACTTATCCTCTTCTTATTAGGTAATGTAGTATCTGGCGCAGTGTTTACCCTTCAAAACCGTTGCAGTTACACAGTTTGGCCAGGGACACTTTCCGGCAACGGCGTCGCCACTCTCGGCGACGGCGGTTTTCCTCTGGAGCCAGGTGCGGAGGTTCAGCTCACCGCACCGTCCGGCTGGTCCGGCCGGATCTGGGCCAGGACCGGCTGCAGCTTCGACGGTTCCGGCATCGGAACATGCGCCACCGGAGACTGCGCCGGGGGACTGAGGTGCACCGGAGGAGGCGTTCCGCCAGCGACTCTGGCGGAGTTCACTATCGGATTCGCCGGTAACGGCGACAAGGACTTCTACGACGTTAGTCTCGTGGACGGTTACAATGTAGGCATCGGCGTGCTGGCTACCGGAGGAACCGGTGACTGCCGGTACGCGGGGTGCGCGGCGGACTTGAACGCTGCGTGTCCAGAGGAGTTGCAAGTGAGAGACAGCGGCGGCGTGGTGGTGGCGTGCAAGAGCGCGTGCGCCGCATTTAACACGCCGGAGTTTTGCTGCACCGGCGAGCACGGGACGCCGCAAACGTGTTCGGCGACACACTATTCAGAGATTTTCAAGAATGCGTGTCCAACAGCGTACAGTTACGCTTACGATGATGCTTCCAGCACTCGCACCTGTTCTACAGCTGATTACGTTATTGCCTTTTGCCCTTAA | 735 | 0.5891 | MALNPNSKVFALILFLLGNVVSGAVFTLQNRCSYTVWPGTLSGNGVATLGDGGFPLEPGAEVQLTAPSGWSGRIWARTGCSFDGSGIGTCATGDCAGGLRCTGGGVPPATLAEFTIGFAGNGDKDFYDVSLVDGYNVGIGVLATGGTGDCRYAGCAADLNAACPEELQVRDSGGVVVACKSACAAFNTPEFCCTGEHGTPQTCSATHYSEIFKNACPTAYSYAYDDASSTRTCSTADYVIAFCP* | 245 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu1g0171 | 244 | CDD | TLP-PA | 25 | 243 | - | - | |
| Pvu1g0171 | 244 | PRINTS | Pathogenesis-related protein signature | 25 | 37 | IPR001938 | - | |
| Pvu1g0171 | 244 | PRINTS | Pathogenesis-related protein signature | 73 | 84 | IPR001938 | - | |
| Pvu1g0171 | 244 | PRINTS | Pathogenesis-related protein signature | 86 | 115 | IPR001938 | - | |
| Pvu1g0171 | 244 | PRINTS | Pathogenesis-related protein signature | 234 | 243 | IPR001938 | - | |
| Pvu1g0171 | 244 | Pfam | Thaumatin family | 30 | 244 | IPR001938 | - | |
| Pvu1g0171 | 244 | PIRSF | PR5 | 3 | 244 | IPR001938 | - | |
| Pvu1g0171 | 244 | Gene3D | Thaumatin | 24 | 244 | IPR037176 | - | |
| Pvu1g0171 | 244 | SUPERFAMILY | Osmotin, thaumatin-like protein | 24 | 244 | IPR037176 | - | |
| Pvu1g0171 | 244 | PANTHER | PATHOGENESIS-RELATED PROTEIN 5-RELATED | 12 | 244 | - | - | |
| Pvu1g0171 | 244 | SMART | tha2 | 26 | 244 | IPR001938 | - | |
| Pvu1g0171 | 244 | ProSiteProfiles | Thaumatin family profile. | 23 | 244 | IPR001938 | - | |
| Pvu1g0171 | 244 | ProSitePatterns | Thaumatin family signature. | 86 | 101 | IPR017949 | - | |
| Pvu1g0171 | 244 | PANTHER | OS03G0233200 PROTEIN | 12 | 244 | IPR001938 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu1g0171 | Pvu-Chr1 | 1391595 | 1393584 | Tandem |