Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0170 ATGGAGTCCATGGTTCGGTGCTATAGTTCGCGCGCGCTATTCGGATTTGGTTGCAACCTTCGATTCGCCGTCGTTGTTTTTGAGATTGTATTGATATTGGCATGGTTGGAAGTCTATAATGCAAAGCTCCCAGAACACCAATTTTATTGGGGAGGTTTGGAAGGGAGGAGTGAGAACATTGCCTCACACTCTTGCATACATGACCAGATACTTGAGCAGAGAAAGCGACCTGGTCGCAAGGTGTATTCAGTTACCCCACAGGTTTACAAGCCTGGTCTTTCAAAGCACCTCCAGCTCAAAGGTAGAACATTACTTGGTATATCAACACCATCAGAGCTTCTAGGTATTGAAAAACAACCTATTAGGATATATCTAAATTATGATGCAGTTGGTCACTCCCCTGACAGGGATTGCCAAAAGATTGGTGATATTGTCAAGCTTGGGGAGCCTCCCATGACTTCTATTCCTGGTTTGCCTTCTTGTAATCCTCTTGCTGATCCTCCAGTCTTTGGTGATTGTTGGTATAACTGCACTTCTGAAGATATCTCAGGAGAGGACAAAAAACATCGCCTTCATAAGGCATTAGGTCAGACAGCTGACTGGTTTAGGAGGGTCTTGTCTGTTGAGCCTGTTAAGGGGAACTTGCGATTAAGTGGATACTCTGCATGTGGACAAGATGGAGGCGTGCAGCTTCCTCATGCATATGTTGAAGAGGGAGTCTCTGATGCCGACTTGGTTCTCTTGGTGACTACAAGACCTACAACTGGGAATACACTTGCTTGGGCTGTGGCATGTGAACGGGATCAATGGGGTCGTGCTATAGCTGGACATGTTAATGTTGCTCCTCGTCATTTGACAGCTGAGGCAGAGACTTTGCTATCAGCTACTCTGATACACGAGGTTATGCATGTTCTTGGTTTCGATCCACATGCCTTTGCTCATTTTAGAGATGAAAGGAAAAGGCGCCGTGACAAGGTTACTGAACGAGTTATGGATGAAAAGATTGGGCGGATGGTAACACGTGTGGTGCTTCCACGTGTTGTCATGCATTCTCGGCATCATTATGTGGCATTTTCAGGAAATTTTACTGGCTTGGAGCTGGAAGATGGTGGAGGACGTGGCACATCAGGGTCTCACTGGGAAAAGAGGCTTCTGATGAATGAGATCATGACAGGTTCTGTGGATACAAGATCTGTAGTTTCAAAAATGACACTAGCTCTATTAGAAGACAGTGGATGGTACAAAGCCAATTATAGCATGGCAGACCAACTTGATTGGGGTCGGAACCAGGGTACTGAGTTTGTTACCTCCCCTTGCAATGTATGGAAGGGGGCCTATCATTGCAACACAACACAATTCTCTGGTTGTACGTATAACAGAGAGGCGGAGGGTTACTGCCCAATTCTAACCTACAGCGGAGATCTTCCTCAGTGGGCTCGGTATTTTCCTCAAGCTAATAAAGGTGGACAATCCTCATTGGCTGATTATTGCACTTATTTTGTTGCATACTCTGACGGATCATGTACAGACACTAGCAGTGCACGGGCACCTGATAGCATGCTAGGTGAAGTTCGAGGAAGTAACTCTAGGTGTATGGCTTCATCGCTAGTGCGTACAGGATTTGTACGGGGTTCTCTGACCCAGGGAAATGGCTGTTATCAGCACAGGTGTATCAACAGTTCTTTAGAGGTTGCTGTGGATGGTGTCTGGAAAGTGTGTCCTCAGGCTGGTGGACCCATTCAGTTCCTTGGCTTTAATGGTGAATTAGTCTGCCCTGCATATCATGAGCTCTGTAACACGGATCCAATGGTTGTGTCTGGGCAATGTCCCAGTGCATGTAATTTCAATGGAGACTGTGTTGATGGAAGGTGTCACTGCTTTCTTGGATTTCATGGTCATGATTGCAGTAGACGTTCCTGTCCCAGCGATTGCACTGGCAAGGGCGTTTGCCTTGCCAGTGGAATATGTGAATGTAAAACTGGCTATACTGGCATTGACTGTTCTACTGCTGTTTGTGATGAGCAATGCAGTCTTCATGGTGGAGTTTGTGATAATGGAGTTTGTGAATTCCGTTGTTCTGACTATGCGGGATATACTTGCCAGAACAGCTCCAGGCTCCTCTCCAGTCTTTCAATTTGCAGAAATGTGCTGGGAAATGATATTTCCGGACAACATTGTGCACCAAGTGAAGCTAGCATACTACAGCAACTAGAAGAAGTGGTTGTGATGCCCAACTACCATCGTTTATTCCCAGGTGGTGCTAGGAAACTATTTAATATATTTGGCAGTACGTACTGTGATGAGACAGCTAAAAGGCTTGCCTGCTGGATCTCAATCCAGAAGTGTGAGAAGGATGGAGACAACAGGCTACGAGTATGTCATTCTGCATGTCAGGCTTACAATCTAGCATGTGGAGCTTCACTAGACTGCGGTGACCAAACCCTTTTCAGCAGCGAGGGGGAGGGGGAGGGTCAGTGCACTGGCTCTGGTGAGATGAAATTATCATGGTTTAATCGACTGAGAAATAGTTTTTCTTTGAGAAATAGTTCCTCAGAAGTAATATCTGTAAGATATAGGCATCTTTAG 2586 0.4578 MESMVRCYSSRALFGFGCNLRFAVVVFEIVLILAWLEVYNAKLPEHQFYWGGLEGRSENIASHSCIHDQILEQRKRPGRKVYSVTPQVYKPGLSKHLQLKGRTLLGISTPSELLGIEKQPIRIYLNYDAVGHSPDRDCQKIGDIVKLGEPPMTSIPGLPSCNPLADPPVFGDCWYNCTSEDISGEDKKHRLHKALGQTADWFRRVLSVEPVKGNLRLSGYSACGQDGGVQLPHAYVEEGVSDADLVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHEVMHVLGFDPHAFAHFRDERKRRRDKVTERVMDEKIGRMVTRVVLPRVVMHSRHHYVAFSGNFTGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYKANYSMADQLDWGRNQGTEFVTSPCNVWKGAYHCNTTQFSGCTYNREAEGYCPILTYSGDLPQWARYFPQANKGGQSSLADYCTYFVAYSDGSCTDTSSARAPDSMLGEVRGSNSRCMASSLVRTGFVRGSLTQGNGCYQHRCINSSLEVAVDGVWKVCPQAGGPIQFLGFNGELVCPAYHELCNTDPMVVSGQCPSACNFNGDCVDGRCHCFLGFHGHDCSRRSCPSDCTGKGVCLASGICECKTGYTGIDCSTAVCDEQCSLHGGVCDNGVCEFRCSDYAGYTCQNSSRLLSSLSICRNVLGNDISGQHCAPSEASILQQLEEVVVMPNYHRLFPGGARKLFNIFGSTYCDETAKRLACWISIQKCEKDGDNRLRVCHSACQAYNLACGASLDCGDQTLFSSEGEGEGQCTGSGEMKLSWFNRLRNSFSLRNSSSEVISVRYRHL* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0170 861 Pfam Leishmanolysin 175 600 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Pvu1g0170 861 ProSitePatterns EGF-like domain signature 1. 656 667 IPR000742 -
Pvu1g0170 861 PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE 1 833 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Pvu1g0170 861 ProSiteProfiles EGF-like domain profile. 636 668 IPR000742 -
Pvu1g0170 861 Gene3D Leishmanolysin domain 4 503 598 - -
Pvu1g0170 861 PRINTS Leishmanolysin (M8) metalloprotease family signature 249 278 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Pvu1g0170 861 PRINTS Leishmanolysin (M8) metalloprotease family signature 402 431 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Pvu1g0170 861 Gene3D Laminin 639 670 - -
Pvu1g0170 861 Gene3D Laminin 608 637 - -
Pvu1g0170 861 Gene3D Leishmanolysin domain 3 443 501 - -
Pvu1g0170 861 ProSitePatterns EGF-like domain signature 2. 656 667 IPR000742 -
Pvu1g0170 861 SMART egf_5 608 636 IPR000742 -
Pvu1g0170 861 SMART egf_5 639 668 IPR000742 -
Pvu1g0170 861 Pfam EGF-like domain 640 667 IPR013111 -
Pvu1g0170 861 Gene3D Leishmanolysin , domain 2 314 439 - -
Pvu1g0170 861 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 119 602 - -
Pvu1g0170 861 Gene3D - 117 304 - -
Pvu1g0170 861 PANTHER METALLOENDOPEPTIDASE/ZINC ION-BINDING PROTEIN 1 833 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0170 Pvu-Chr1 1381390 1390817 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0170 1 1381390 1390817 Pvu1g0170 1 1381390 1390817 ECH
Pvu1g0170 1 1381390 1390817 Pvu9g0577 9 10307921 10316464 PCT