Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0149 ATGGCCATAGCTCGGTTGGTTCGGCAGGCGAAACGCCCTCATGGGTTGTGGGTGAAGATGGCAGCTGTGACTGTATTGGGTCTCTGTTTCATCTTTGTGTGGGGAGTGTTTTCTTCTTCTTCTTCCTCTGTCACTTCCCAAAGGGAGAGTTTTGAGGACATTGCGGAACCCGTGTCCTCTTCTTCTCACAAGCCGCAAAAGTTGAGAGATGATTCTAAAAAGGGTGGGGGGAGTGAGAAAAAGAGTAAGAGTAACGGTAACGGGTCTTCTCACTCTTCTGCCACGCGTCCTCACTCTGAACAACACAAGGGAAAGGACAGCAAGAAAGAGAAGAAACACGTGCATGAGGAGGACAAGGAGAAAGGGAATCATCAAGGGTTAGAGGATCCTCAACCCCAACATGTGGAAGAGAAAGAGAAAGAGAAAGAGAACGAGAAAGAGGAAGTGGAGGTGGAGGGTGAAGAAGAGAAAGTGGATCATGAGAGTGAAGTGGATGTGGATGCTGATGGTGGCAGTGATTTGGCTGAATCCGTGGATAAGGATGGTTCCGAGGTGGTGGAGGATGTGGAGGAGTTGAGAAAAAAAAGCAAGGGAAAGATCACAGGACCCTTGTTTGATCCAAATGCTAGCTATAGCTGGAAATTGTGTAGTACTAGAAGCAAACATAATTACATTCCCTGCATTGATATTGAAGTTGGTGGTGGCAAAGTAACAAGCTACCGGCACACAGAGAGGAGTTGTCCTAGGACACCCCTTATGTGTCTGGTTCCTCTTCCTCATGAAGGGTATGGATTTCCACTGCCTTGGCCTGAGAGCAAATTGAAGATATTGTATAAGAATGTTGCACACCCGAAACTAGCTGCTTACATAAAAAGGCATAGTTGGTTGATGGAGTCTGAAGAGTATCTTACTTTTCCCCAAAACCAATCTGAGTTCAAGGGAGGGATTCATCACTATCTTGAGTCCATTGAAGAGATGGTACCAGACATTGAATGGGGTAAAAACATTCGTGTTGTCCTGGACATTGGATGTACAGATTCGAGCTTTGCAGCTGCGCTCCTTGATAAGGAAGTTTTAACATTATCACTAGGATTGAAGAATGACCTTGTGGACGTGGCTCAGGTGGCACTTGAACGGGGTTTTCCAGCAGTGATTAGTCCTTTCAATAGAAGGAGGCTTCCTTTTCCAAGTCAAGTTTTTGATGCTATACATTGTGCAGGTTGCAGCATACCTTGGCATACCAACGGTGGAAAACTTCTGTTGGAGATGAATAGGATTCTTAGACCTGGTGGATACTTTATTATGTCAACTAAACATGACAGTATTGAAGAAGAAGAAGCCATGACAACATTGACTGCATCTATTTGTTGGAATGTTCTGGCTCACAAAAGTGATGATGTTGGCGAAGTTGGAGTTAAAATATATCAGAAGCCTGAAGGAAATGACATATACCAACTGAGGAGGAAGAAGATTCCACCGCTTTGCAAAGAAAATGAAAATCCTGATGCAGTCTGGTATGTTCCCATGAAGACTTGTTTGCACCCCATTCCATCTGGAATTGAACAACATGGGGCAGAGTGGCCTGAGGAATGGCCGGCGAGGCTCGAAACCTATCCTGATTGGGTGAACAACAAAGAGAAAGTGGTTGCAGACACCAATCACTGGAATGCTGTTGTTAATAAGTCATATATCAGTGGATTGGGCATTAACTGGACAAGTATCCGGAATGTAATGGACATGAAATCCATCTATGGAGGATTGGCTGTAGCTCTCTCTCAACAAAAGGTCTGGGTGATGAATGTAGTGCCTGTTCATGCACCTGATACACTTCCCATCATTTTTGAACGTGGACTTATTGGTATATACCATGATTGGTGTGAGTCATTTGGCACTTATCCAAGAACATATGACCTTTTGCATGCTGATCATTTGTTCTCACGGCTCAAAAACAGGTGCAAGCAACCTGTGTCCATTGTTGTTGAGATGGACCGTATACTAAGACCAGGAGGTTGGACAATTATACGTGACAAAGTTGAAATTTTGAATCCATTGGAAGAAATATTGAAAAGTATGCAGTGGGAGATTAGGATGACTTTTGCTCAGGATAAGGAGGAAACCGGAACCTGCAAAACCCTCGCTCTCCGCCTCCACCGTCTCCTCGCCTCCAACGGCGTCGCATTCGACGTCGTCGATTCGCGCCACTACGAGCCCGAGGATCTCCCCAAGGAGACGCTCCTCCTACTCGTTGCCTCCACGTGGCAGGACGGGGCTCCCCCCGCTGCCTCCCGCTTCTTCGCCACGTGGCTCGCCGAGGCCGCCGCCGATTTCCGCGCCGGCTCCCTCCTCCTTTCGAGCTGCCGTGTAGCCGTATTTGGCGTCGGGAGCCGAGCCTATGGCGAGTCCTTCAACGCCGTTGCGAAGGGCCTCGCGACGCACCTGAGGGCGCTCGGCGCCAAGGAGGTGGTTCCGCTTTGCGAAGGGGATGTTGATGGTGGTGACCTGGACGAGGTTTTCGATCGGTGGTGTGAGAAGGTGGTGGCCGTTTTGAAAGGAGGTGGTGTTGCGGAGTGCGATGATGATGATAGTGGTGGTGCTGTGGAGAGTGTCTATTCGAGTTCCGAAGAGGAGTCTGATGTGGAGAGTGAGATTGTTGACCTTGAGGACATTGCTGGTAAAGCTCCTTCACGGCGGAAGACTGTGGCTAATGGGGAAGAGAGTAATGGGAAATTGAATGGCAGAAAAGAAATGGTGACTCCGGTGATTCGAGCAAATTTAGAGAAGCAGGGGTATAAAATCATTGGGTCGCATAGTGGTGTCAAGATTTGTAGATGGACCAAGGCGCAGCTTCGTGGTCGAGGTGGTTGCTATAAGCACTCGTTTTATGGAATCGAGAGTCACAGATGCATGGAGACAACCCCTAGCTTGGCATGTGCAAATAAATGTGTTTTCTGCTGGAGGCATCACACAAATCCAGTAGGGAAAAGTTGGCAATGGCAGATGGATGATCCGATAGAGATTGTAAATTCTGCAATAGACCTCCATAAAAATATGGTTAAACAAATGAAAGGAGTTCCTGGAGTCACCTTGGAGCGATTAAATGAAGGTCTCTCACCTCGTCATTGTGCATTATCTCTTGTTGGTGAACCTATAATGTATCCAGAGATAAATGCACTTGTGGATGAGCTGCACAAAAGGAGGATTTCCACCTTTCTAGTTACAAATGCACAATTTCCAGAGAAAATTAAATCGCTCAAACCTATTACCCAGTTATATGTCAGTGTAGATGCTGCAACAAAGGACTCTTTGAAGGCAATTGATAGACCACTATTTGGCGATTTCTGGGAGCGATTCATTGATTCCTTGACTGCTTTAAGGGAAAAACATCAGCGAACTGTATACCGCCTGACCCTGGTGAAAGGTTGGAATACTGAAGATGTTGATGCTTATTCTAAGCTCTTTAGTATAGGAGATCCTGACTTTGTTGAAATCAAGGGAGTTACGTATTGTGGCTCGTCCACTACATCAAAACTGACAATGGAAAATGTCCCTTGGCATACTGATGTGAAAGCTTTTTCAGAGGCCCTAGCTTTGAAAAGCCAAGGAGAGTATGAAGTTGCATGTGAGCATGCTCACTCGTGCTGTGTCCTCTTAGCAAAAACTAATAAGTTCAAAATCGATGGTCAGTGGTATACATGGATAGACTATGAAAAATTTCATGATCTGGTGGCATCTGGAAAAACTTTTGACAGCAGTGATTACATGACTGTCACACCATCCTGGGCCATCTATGGATCGGATGAAGGTGGATTTGATCCAAGACAATTGAGATATAGGAAAGAGAGACATCACAAGTCAAGCCGCAAACAATGA 3870 0.4612 MAIARLVRQAKRPHGLWVKMAAVTVLGLCFIFVWGVFSSSSSSVTSQRESFEDIAEPVSSSSHKPQKLRDDSKKGGGSEKKSKSNGNGSSHSSATRPHSEQHKGKDSKKEKKHVHEEDKEKGNHQGLEDPQPQHVEEKEKEKENEKEEVEVEGEEEKVDHESEVDVDADGGSDLAESVDKDGSEVVEDVEELRKKSKGKITGPLFDPNASYSWKLCSTRSKHNYIPCIDIEVGGGKVTSYRHTERSCPRTPLMCLVPLPHEGYGFPLPWPESKLKILYKNVAHPKLAAYIKRHSWLMESEEYLTFPQNQSEFKGGIHHYLESIEEMVPDIEWGKNIRVVLDIGCTDSSFAAALLDKEVLTLSLGLKNDLVDVAQVALERGFPAVISPFNRRRLPFPSQVFDAIHCAGCSIPWHTNGGKLLLEMNRILRPGGYFIMSTKHDSIEEEEAMTTLTASICWNVLAHKSDDVGEVGVKIYQKPEGNDIYQLRRKKIPPLCKENENPDAVWYVPMKTCLHPIPSGIEQHGAEWPEEWPARLETYPDWVNNKEKVVADTNHWNAVVNKSYISGLGINWTSIRNVMDMKSIYGGLAVALSQQKVWVMNVVPVHAPDTLPIIFERGLIGIYHDWCESFGTYPRTYDLLHADHLFSRLKNRCKQPVSIVVEMDRILRPGGWTIIRDKVEILNPLEEILKSMQWEIRMTFAQDKEETGTCKTLALRLHRLLASNGVAFDVVDSRHYEPEDLPKETLLLLVASTWQDGAPPAASRFFATWLAEAAADFRAGSLLLSSCRVAVFGVGSRAYGESFNAVAKGLATHLRALGAKEVVPLCEGDVDGGDLDEVFDRWCEKVVAVLKGGGVAECDDDDSGGAVESVYSSSEEESDVESEIVDLEDIAGKAPSRRKTVANGEESNGKLNGRKEMVTPVIRANLEKQGYKIIGSHSGVKICRWTKAQLRGRGGCYKHSFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGKSWQWQMDDPIEIVNSAIDLHKNMVKQMKGVPGVTLERLNEGLSPRHCALSLVGEPIMYPEINALVDELHKRRISTFLVTNAQFPEKIKSLKPITQLYVSVDAATKDSLKAIDRPLFGDFWERFIDSLTALREKHQRTVYRLTLVKGWNTEDVDAYSKLFSIGDPDFVEIKGVTYCGSSTTSKLTMENVPWHTDVKAFSEALALKSQGEYEVACEHAHSCCVLLAKTNKFKIDGQWYTWIDYEKFHDLVASGKTFDSSDYMTVTPSWAIYGSDEGGFDPRQLRYRKERHHKSSRKQ* 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0149 1289 MobiDBLite consensus disorder prediction 163 186 - -
Pvu1g0149 1289 CDD AdoMet_MTases 339 436 - -
Pvu1g0149 1289 CDD Radical_SAM 973 1149 - -
Pvu1g0149 1289 Gene3D Vaccinia Virus protein VP39 309 481 IPR029063 -
Pvu1g0149 1289 Gene3D Aldolase class I 901 1231 IPR013785 -
Pvu1g0149 1289 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 266 443 IPR029063 -
Pvu1g0149 1289 Pfam Wyosine base formation 1156 1219 IPR013917 -
Pvu1g0149 1289 Pfam Radical SAM superfamily 972 1151 IPR007197 GO:0003824|GO:0051536
Pvu1g0149 1289 Pfam Flavodoxin 705 841 IPR008254 GO:0010181
Pvu1g0149 1289 PANTHER METHYLTRANSFERASE PMT28-RELATED 8 705 - -
Pvu1g0149 1289 MobiDBLite consensus disorder prediction 49 186 - -
Pvu1g0149 1289 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 526 698 IPR029063 -
Pvu1g0149 1289 MobiDBLite consensus disorder prediction 81 95 - -
Pvu1g0149 1289 SFLD Radical SAM 912 1223 IPR007197 GO:0003824|GO:0051536
Pvu1g0149 1289 MobiDBLite consensus disorder prediction 96 147 - -
Pvu1g0149 1289 SUPERFAMILY Flavoproteins 705 849 IPR029039 -
Pvu1g0149 1289 MobiDBLite consensus disorder prediction 148 162 - -
Pvu1g0149 1289 Coils Coil 135 157 - -
Pvu1g0149 1289 ProSiteProfiles Flavodoxin-like domain profile. 698 846 IPR008254 GO:0010181
Pvu1g0149 1289 SFLD tRNA wybutosine-synthesizing 912 1223 IPR034556 GO:0008033|GO:0051539
Pvu1g0149 1289 MobiDBLite consensus disorder prediction 63 80 - -
Pvu1g0149 1289 SUPERFAMILY Radical SAM enzymes 974 1154 - -
Pvu1g0149 1289 ProSiteProfiles Radical SAM core domain profile. 961 1204 IPR007197 GO:0003824|GO:0051536
Pvu1g0149 1289 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 8 705 IPR004159 GO:0008168
Pvu1g0149 1289 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 223 705 IPR004159 GO:0008168
Pvu1g0149 1289 Gene3D - 705 855 IPR029039 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0149 Pvu-Chr1 1215007 1226699 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0149 1 1215007 1226699 Pvu1g0149 1 1215007 1226699 ECH