Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0139 ATGCCATTCAGGAGCATAGTGCGTGAGCTCAAGGAGATTGGAGAGGGTATCAGCAACATGTATAGAAGAGGGGGAGAGGGAAAGCATGTGCATCGCCATGGAAAATCTCACATTGCACCAGAATGTTCCCTACCATCCTCCTCCTCCTCCTCCTCATCATCATCTTCTTCTTCTTCTTCATCATCACAGAGTCGGTGGGCTAACTTACCACCAGAGTTGCTTTTAGACATAATTCAAAGGTTGGAAGCCAGTGAAACCTCCTGGCCTTCACGTAGAGCACTTGTGGCATGTTCCTCAGTTTGTAGGCTGTGGAGAGAGATAACAAAGGATGTGGTCAAGATACCAGAACAGTGTGGTTTGCTCACTTTTCCCATATCACTGAAGCAGCCGGGCCCAAGAGACTCACCAATCCAGTGTTTTATCAGGAGAGAAAGAGTGTCTTCAACATATTGTTTATATCTCGGCCTAAGCCCTGCACTTTCTGGTGATATGAGCAAACTGTTACTGGCAGCAAAGAAGATTCGAAGGGCAACATGTACAGAATTTTTAATATCATTGGTTGCTGATGATTTCTCTCGTACTAGCAATACTTACATTGGAAAGTTGAGGTCTAATTTTCTGGGCACCAAGTTCACAATCCTGGATGGTGAGTCCCCACATGATTCGTCACTTCCATTGAACTGCAAGTTGCAGCAAAGAGTCCATCTGAAGCAGGTACTTCCAAAGGTTGCTGCTGCTAACTACAAAGTGGCAACAGTGTCTTATGAACTCAATGTCCTCCGAACAAGAGGTCCAAGGAGAATGCGGTGCACGATGCACTTGATACCCATATCTGCAATCCAAGAAGGAGGGAGTGCCCCAACTCCTTTAAAGTTTACAAATTATCTTAATGAGCATGTATCTACCACCACCACCTCAGACTCAAAAGGAAGGAAGCCAGAAGTTGTTGAGTTTGACACAACTGACACTGAAAATACTCAAGAATCAAGCCAGAGGGCAAGGGAACCATTGGTTTTGAAAAACAAGGCCCCTAGATGGCATGAACAACTGCAATGCTGGTGCTTGAATTTCAAGGGAAGGGTTACAGTGGCCTCTGTGAAGAACTTCCAGCTCGTGGCAGCTGCTGAACCATGCCAAAATGTTTCAGCTGCTGAACAAGAAAAAGTGATACTACAATTTGGAAAAATTGGGAAGGACATATTCACCATGGATTACCGATACCCCCTCTCAGCTTTTCAAGCCTTTGCAATATGTTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA 1290 0.4488 MPFRSIVRELKEIGEGISNMYRRGGEGKHVHRHGKSHIAPECSLPSSSSSSSSSSSSSSSSSQSRWANLPPELLLDIIQRLEASETSWPSRRALVACSSVCRLWREITKDVVKIPEQCGLLTFPISLKQPGPRDSPIQCFIRRERVSSTYCLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVADDFSRTSNTYIGKLRSNFLGTKFTILDGESPHDSSLPLNCKLQQRVHLKQVLPKVAAANYKVATVSYELNVLRTRGPRRMRCTMHLIPISAIQEGGSAPTPLKFTNYLNEHVSTTTTSDSKGRKPEVVEFDTTDTENTQESSQRAREPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0139 429 ProSitePatterns Tub family signature 1. 357 370 IPR018066 -
Pvu1g0139 429 MobiDBLite consensus disorder prediction 41 65 - -
Pvu1g0139 429 Pfam Tub family 127 424 IPR000007 -
Pvu1g0139 429 ProSitePatterns Tub family signature 2. 414 429 IPR018066 -
Pvu1g0139 429 SUPERFAMILY F-box domain 54 110 IPR036047 GO:0005515
Pvu1g0139 429 PRINTS Tubby superfamily signature 182 198 IPR000007 -
Pvu1g0139 429 PRINTS Tubby superfamily signature 198 222 IPR000007 -
Pvu1g0139 429 PRINTS Tubby superfamily signature 247 274 IPR000007 -
Pvu1g0139 429 PRINTS Tubby superfamily signature 339 356 IPR000007 -
Pvu1g0139 429 PRINTS Tubby superfamily signature 357 373 IPR000007 -
Pvu1g0139 429 PRINTS Tubby superfamily signature 386 405 IPR000007 -
Pvu1g0139 429 PRINTS Tubby superfamily signature 407 429 IPR000007 -
Pvu1g0139 429 Pfam F-box domain 66 112 IPR001810 GO:0005515
Pvu1g0139 429 PANTHER TUBBY-RELATED 1 429 - -
Pvu1g0139 429 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 429 - -
Pvu1g0139 429 MobiDBLite consensus disorder prediction 320 334 - -
Pvu1g0139 429 Gene3D - 59 112 - -
Pvu1g0139 429 MobiDBLite consensus disorder prediction 23 65 - -
Pvu1g0139 429 SUPERFAMILY Tubby C-terminal domain-like 115 429 IPR025659 -
Pvu1g0139 429 MobiDBLite consensus disorder prediction 301 335 - -
Pvu1g0139 429 Gene3D Tubby Protein; Chain A 125 429 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0139 Pvu-Chr1 1149909 1153823 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pvu1g0139 Tub 2.8e-105 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0139 1 1149909 1153823 Pvu1g0139 1 1149909 1153823 ECH