Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0121 ATGGGATCAGCTTGTTGTGTTGCTGCTGCAAAGGATCCTAATCTTCCTAACAGAACTGGAGGTGAAACCGTGCGTAGAGATGTTGTTTGTTCACCATCGTGGAGCTTTCAATGGGATAGTAGGGAGCGTGTTGCTGGTGAAATTGAGAATCCTTCTTATCACACATCTCATGTGGACAGTAGAAATGTCAGCATGGAGTTAAAAGGTTCATTAAGTTCCGAAAGAGGTAATTTGTCAGATGGGGGAAGCATCATGGAGAATTCTGTGACTCCTATTTCTCTGAAGTCCCCTGTTGATGAGGCACTGGTTGCAAATCTGATGACCCCCTCTTCTGATCTGTCCATGTCAAGCAATTTTTCTACAGTGGTGAAGAACCCAGCGGAATCTTCAATACCAAATCTTTCTTTTTCAATACCTTCAGTCTTCTCAACAGCCACAGCAGATCCTTTGCTTAATCACAATTATCACCATCTTCACAACTCTACCCCAACAAGATGGGCACATCGTTCTCCAGCACACCCTCTGTTGAGACAGATTTCTGATAGTCGAATCATGGGTCTGAAATCGCCAGACAACTCAATTTCTGAAGGTAGGCCATCCTTTGTACTCTCTACTTGCAGCAATGAAATGGCTGCTGGATCCCTATGTGGATCATCTGATGGCTGGTCAATGCGAACCTTCTCTGAGATGGTGGCATCATCCCAAAGGGAACGGTGGTCTTTTGATAGTGAGTGTTTTGGCTCTGGTCGTCACAAGATAAGTGGATCCAGTAGCAGGTTCTCATATTCTCCCTCCATGGAACTACAATCTTGTGGGGCTTGCTCAAAGCTTTTGACTGAGAGATCAACATGGAGCAACCAGAAGTTTATTGCCAACAATGATCTCTCGGTTGTTGCTGTGCTGGTCTGTGGTCATGCATATCATGCAGAGTGTTTAGAGGCTATGACACCAGAGGCAGATAGGTATGATCCAGCTTGTCCAATTTGTATGGTTGGAGAGAAGCACTTTTCAAAGTTGTCTAGAAAAGTTCTTCGGGCTGAATCAGAGATAAAGGCCAAGAACCACAAGATATCCAGAAACCGTGTAGTTGATAGCTACCTTGATGGTGGTTTTGATGTTTTTGATCGCCAAAAAGATATTAATTTGGGAGGAAAAGTTTCAAAAATGGAGCCTAGCTCCAGTGGTAGGAGCACATTTGGAAAGCCATTCTTGAGGCGGCACTTTTCACTTGGATCCAAGTGGAGCCGATCCCTGTCCGATAATGATTCTGCAAGGAAGAAAGGATTTTGGGCAAGATATCGTAAAGATTGA 1311 0.4424 MGSACCVAAAKDPNLPNRTGGETVRRDVVCSPSWSFQWDSRERVAGEIENPSYHTSHVDSRNVSMELKGSLSSERGNLSDGGSIMENSVTPISLKSPVDEALVANLMTPSSDLSMSSNFSTVVKNPAESSIPNLSFSIPSVFSTATADPLLNHNYHHLHNSTPTRWAHRSPAHPLLRQISDSRIMGLKSPDNSISEGRPSFVLSTCSNEMAAGSLCGSSDGWSMRTFSEMVASSQRERWSFDSECFGSGRHKISGSSSRFSYSPSMELQSCGACSKLLTERSTWSNQKFIANNDLSVVAVLVCGHAYHAECLEAMTPEADRYDPACPICMVGEKHFSKLSRKVLRAESEIKAKNHKISRNRVVDSYLDGGFDVFDRQKDINLGGKVSKMEPSSSGRSTFGKPFLRRHFSLGSKWSRSLSDNDSARKKGFWARYRKD* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0121 436 ProSiteProfiles Zinc finger RING-type profile. 271 329 IPR001841 -
Pvu1g0121 436 SMART ring_2 271 329 IPR001841 -
Pvu1g0121 436 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 1 430 - -
Pvu1g0121 436 SUPERFAMILY RING/U-box 270 330 - -
Pvu1g0121 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 331 IPR013083 -
Pvu1g0121 436 PANTHER EXPRESSED PROTEIN 1 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0121 Pvu-Chr1 1015454 1019491 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0121 1 1015454 1019491 Pvu1g0121 1 1015454 1019491 ECH