Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0116 ATGAGTGGTGCTGCATTTCTCTACGGTTCGCTTATTCATCCACCACCACCATCACCACCATCACCACCGTTGATTCAACAACAACGCTATCACTATTTATCACCACCAATCCCAATTCGTCCCCTATGCATATCCCCTCTCACCGTCGCAATTGTTTCCACCACCTCCGTTCTCCACCGCGATTCCGAAGTTGAGCTCGCGTCGTCGTCTAACGACTCAAGCGACGCCGTTTCACCGCAGAATGAAACGGTTCGGCTGGAGACGGAGCGGCACACCGACGAAACAGTTCAGCCGCCGCTCTCTTCCGAAGATAAAGGAACTAGACTTCGAAAGAAGAAAGAAGACGAAGTCGTTTCGGATAACCGCTTCAAGCTCCGCAACGGAAGAGAAGTTTTTGAGGAAAAAGCGTATCTCGTAGGTGTTGAGCGCAAGAACGATGTTCAGGATTTTGGAAACGAAGAGTCCCTGAGCGAATTGGCGCAGTTAGCTGACACTGCTGGATTATTGGTTGTTGGCTCTACTTACCAGAAGCTCACTTCTCCAAACCCTCGGACATACATTGGCTCTGGCAAGGTTTCTGAAATTAAGAGTGCAATTCATGCATTGGATGTTGAAACCGTTATCTTTGATGATGAACTGTCAGCCGGGCAATTGCGCAACTTGGAAAAGATTTTTGGTGGAGATGTGAGAGTTTGTGATCGAACTGCCCTCATCCTTGATATATTTAATCAACGAGCAGCAACACATGAAGCGTCTTTACAGGTTTCATTAGCACAAATGGAATACCAACTACCTCGTCTAACAAAAATGTGGACTCATCTTGAGCGTCAAGCTGGAGGAAAGGTGAAGGGAATGGGTGAAAAGCAAATAGAAGTGGATAAACGTATTCTGCGTAATCAAATTGGTATTCTAAAGAAAGAGCTAGAATCTGTTAGGAAACATCGAAAGCAGTACCGTAGCAGGCGTCTCTCAGTGCCCGTGCCAGTGGTATCTTTGGTTGGTTACACAAATGCTGGTAAGAGTACACTTTTGAATCAACTAACTGGAGCAGATGTTCTTGCTGAGGACAAATTATTTGCAACTTTAGATCCAACTACGAGGAGGGTACAGATGAAGAATGGCAAGGAGTTTCTCCTAACAGACACTGTTGGTTTCATTCAGAAGTTACCTACTACTTTAGTTGCTGCCTTCAGAGCTACACTGGAGGAGATATCGGAGTCATCATTGATGGTGCATGTGGTTGATATAAGTCATCCCCTGGCTGAGCAACAGATAAATGCAGTCGACAAAGTCTTGTCAGAACTAGATGTATCATCAATTCCAAAATTGATGGTCTGGAACAAGGTTGATAAAGTTAGTGATCCCCATAAACTCAGGCTAGAAGCTGAAAAAAGAGATGATGTTGTATGCATATCTGCTATAAGTGGTGATGGTTTGCAAGAATTTTGTAATGCAGTTCAAGACAGGCTAAAGGACTCCATGGTTTGGGTAGAAGCTTTGGTCCCATTTGAAAATGGGGACCTTCTCAGTACCATACACCAGGTTGGAATGGTAGAAAAAATTGAATATACTGAGCAAGGGACATATATCAAGGCACACGTGCCCCTGCGTTTTGCAAGAATGCTCACACCCATGAGGCAACTGTGCGTATCGCGACCTTAA 1662 0.4489 MSGAAFLYGSLIHPPPPSPPSPPLIQQQRYHYLSPPIPIRPLCISPLTVAIVSTTSVLHRDSEVELASSSNDSSDAVSPQNETVRLETERHTDETVQPPLSSEDKGTRLRKKKEDEVVSDNRFKLRNGREVFEEKAYLVGVERKNDVQDFGNEESLSELAQLADTAGLLVVGSTYQKLTSPNPRTYIGSGKVSEIKSAIHALDVETVIFDDELSAGQLRNLEKIFGGDVRVCDRTALILDIFNQRAATHEASLQVSLAQMEYQLPRLTKMWTHLERQAGGKVKGMGEKQIEVDKRILRNQIGILKKELESVRKHRKQYRSRRLSVPVPVVSLVGYTNAGKSTLLNQLTGADVLAEDKLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLMVHVVDISHPLAEQQINAVDKVLSELDVSSIPKLMVWNKVDKVSDPHKLRLEAEKRDDVVCISAISGDGLQEFCNAVQDRLKDSMVWVEALVPFENGDLLSTIHQVGMVEKIEYTEQGTYIKAHVPLRFARMLTPMRQLCVSRP* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0116 553 Hamap GTPase HflX [hflX]. 156 519 IPR016496 GO:0005525
Pvu1g0116 553 TIGRFAM GTP_HflX: GTP-binding protein HflX 135 489 IPR016496 GO:0005525
Pvu1g0116 553 TIGRFAM small_GTP: small GTP-binding protein domain 329 480 IPR005225 GO:0005525
Pvu1g0116 553 MobiDBLite consensus disorder prediction 63 113 - -
Pvu1g0116 553 MobiDBLite consensus disorder prediction 63 83 - -
Pvu1g0116 553 PANTHER GTP-BINDING PROTEIN 6-RELATED 101 538 - -
Pvu1g0116 553 PANTHER GTP-BINDING PROTEIN HFLX 101 538 IPR016496 GO:0005525
Pvu1g0116 553 MobiDBLite consensus disorder prediction 84 113 - -
Pvu1g0116 553 PRINTS GTP1/OBG GTP-binding protein family signature 330 350 IPR006073 GO:0005525
Pvu1g0116 553 PRINTS GTP1/OBG GTP-binding protein family signature 397 415 IPR006073 GO:0005525
Pvu1g0116 553 Pfam 50S ribosome-binding GTPase 330 448 IPR006073 GO:0005525
Pvu1g0116 553 Gene3D - 327 495 IPR027417 -
Pvu1g0116 553 Pfam GTP-binding GTPase N-terminal 153 242 IPR025121 -
Pvu1g0116 553 CDD HflX 287 490 IPR030394 GO:0005525
Pvu1g0116 553 Pfam GTP-binding GTPase Middle Region 245 322 IPR032305 -
Pvu1g0116 553 Gene3D - 246 313 - -
Pvu1g0116 553 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 328 500 IPR027417 -
Pvu1g0116 553 Gene3D - 145 245 IPR042108 -
Pvu1g0116 553 Pfam HflX C-terminal domain 460 528 IPR045498 -
Pvu1g0116 553 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 328 494 IPR030394 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0116 Pvu-Chr1 988834 996906 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0116 1 988834 996906 Pvu1g0116 1 988834 996906 ECH