Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0115 ATGTATTCAGACCAAGCGTTTTCTTCAGGGCCCTATGCAGATATATTATCTGGGAATCCTCTTTTACCTCATAACTACAGTGAAACTGTTGGAGAACACAATGAGTTGAAGTTCATCTCATCCATGAGGAACACAATGACTGTGCAACCTATTGATGAGCATTCAAATGCGGCCCCCACAGCTGATCAAAACTCTTTTACCAATGCTGGAGATTCCCATGCCCATCTTGTTCCTAGAACAACACAATTGGGACTTGTGAACAGTGAGCAAAATGTACAGAACCAAGGCTTGTCTCTTAGCCTTGGCTCAGTGATGCCTTCTATTGCATCAGTCCCTACCTTTCCATATCAGTATCCTGGTGCCGGTTTCTCTTCACTAATGAATGCTTCTGTCCAAAATTTAAGGGGCACTTCATCTCTTAAAGATGATGAAGCCAGCCTACAAAGGGAATTGAGAAATGCTGAGTGCATGGCATCTTTAGCTTCTTGTGGCTTTCACAAAAGGGAAGGTTTGTTGTATACTCCACAACACCCCTCAATGTGCCTCAGTGAAGGCCAAAGCGATGGATCACTGGGCTTTTCCAGCAATGTGTTGAACTCACAATATCTCAAGGCAGCACAGGAGCTGCTTGATGAAATAGTTAATGTTCGAAAGGCTTTGAAGCAAACTGGTTTAGAGAAGCAACAGAGTTTCCGTGATATTGGTTTAGATGGCTCTAAAGATTCTGATGGAAAATCTACCAGCCAAACAGGACAGATATCTTCATGTCCCAATAGTTCTGCTGCAAACTCCTCATGTGAGCTCTCACCTGCAGAGCGACAGAATTTGTTGGACAAAAAGACAAAACTTTTGACCATGTTGGATGAGGTTGATAAAAGATACAGACAGTACTGCCACCAGATGCAGATAGTGGTTTCATCTTTTGATATGGTTGCTGGTTGTGGAGCATCTGAACCATACACTGCACTTGCCTTGCGCACAATATCACGCCACTTTCGGTGTTTGCGCGATGCCATTAGTGGCCAAATTCAAGTGACTCAAAGGAGCCTTGGAGAACAAGAAGGAATACCTCGTCTCCGCTATGTTGATCAGCAGCTTCGGCAGCAAAAGGCCCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAATACTTCGAGCATGGCTCTTTGAGCATTTCCTTCATCCTTATCCAAAGGATTCAGAGAAAATTATGCTGGCTAGGCAAACTGGCTTAACAAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGGCTTTGGAAGCCAATGGTTGAAGAAATCTATAAAGAAGAATTTGGCGTTTCTGAGATGAGCAGCAATCTATTATCATCAGAGAACACACTGAAAGCTCCAAGAGATGATGTCCAATCTTCTGACAGTAAAAGGGAAGAGTCGCTGGACAACTTAATAAAAGTTGATGATAGTGTTATTCAGCATCATGGGTTGAAGTTGGATCATGCCTCAGAGTTGGACAGAGGGATCCAAAGTGGTAATCATGGAGAAAATGCCATGGATCCTACAATTGGGAAACTGCAGGGTGACCAAAGGTTCAACATTAACAACAACAATAGTCCTTATTATGGGGAAGGCTGCATAATTTCTCCTACTCCTGCTACATATGATTTATCAGAGTTAGGTAACATTGGTGTGGGTGGACAGGTGTCACTAGCACTGGAATTGAGGAACTATGAAAGTGAAGGATTTGGTGTGTCCAATGATGAGATGCATAGAAGACGCAAGAAAACAATGGCTTCTTCTTCTCCAGAGGCTGATTTGCTAGACTACCATTTCACAGACCAAGGAAAGCAACAAAACAAGTTTGGCAATCCTCACCTATTACACGAGTTTGTTGTGTGA 1917 0.4335 MYSDQAFSSGPYADILSGNPLLPHNYSETVGEHNELKFISSMRNTMTVQPIDEHSNAAPTADQNSFTNAGDSHAHLVPRTTQLGLVNSEQNVQNQGLSLSLGSVMPSIASVPTFPYQYPGAGFSSLMNASVQNLRGTSSLKDDEASLQRELRNAECMASLASCGFHKREGLLYTPQHPSMCLSEGQSDGSLGFSSNVLNSQYLKAAQELLDEIVNVRKALKQTGLEKQQSFRDIGLDGSKDSDGKSTSQTGQISSCPNSSAANSSCELSPAERQNLLDKKTKLLTMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGASEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFGVSEMSSNLLSSENTLKAPRDDVQSSDSKREESLDNLIKVDDSVIQHHGLKLDHASELDRGIQSGNHGENAMDPTIGKLQGDQRFNINNNNSPYYGEGCIISPTPATYDLSELGNIGVGGQVSLALELRNYESEGFGVSNDEMHRRRKKTMASSSPEADLLDYHFTDQGKQQNKFGNPHLLHEFVV* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0115 638 SUPERFAMILY Homeodomain-like 383 449 IPR009057 -
Pvu1g0115 638 MobiDBLite consensus disorder prediction 241 267 - -
Pvu1g0115 638 SMART prehox3 191 341 IPR006563 -
Pvu1g0115 638 Coils Coil 203 223 - -
Pvu1g0115 638 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677|GO:0006355
Pvu1g0115 638 CDD homeodomain 382 443 IPR001356 GO:0003677
Pvu1g0115 638 MobiDBLite consensus disorder prediction 231 267 - -
Pvu1g0115 638 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677
Pvu1g0115 638 MobiDBLite consensus disorder prediction 465 484 - -
Pvu1g0115 638 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 29 599 - -
Pvu1g0115 638 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 29 599 - -
Pvu1g0115 638 SMART HOX_1 382 446 IPR001356 GO:0003677
Pvu1g0115 638 Gene3D - 379 456 - -
Pvu1g0115 638 Pfam Associated with HOX 197 340 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0115 Pvu-Chr1 981656 986342 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pvu1g0115 POX 3.6e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0115 1 981656 986342 Pvu1g0115 1 981656 986342 ECH
Pvu9g0624 9 10737870 10742757 Pvu1g0115 1 981656 986342 PCT