Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0114 ATGTATTCAGACCAAGCGTTTTCTTCAGGGTCCTATGCAGATATGTTGTCTGGGAATCCTCTTTTACCTCATAAATACAGTGAAACTGTTGGAGGACACAATGAGTTGAAGTTCATCTCATCCATGAGGGACACAATGACCGTGCAACCTATTGATGAGCATTCAAATGCGGCCCCCACAGCTGATCAAGACTCTTTTACCAATGCTGGAGATTCCCATTCCCATCTTGTTCCTAGAACAACACAATTGGGACTTGTGAACAGTGAGCAAAATGTACAGAACCAAGGCTTGTCTCTTAGCCTTGGCTCAGTGATGCCTTCTATTGCATCAGTCCCTACCTTTCCATATCAGTATCCTGGTGCCGGTTTCTCTTCACTAATGACTGCTTCTGTCCCAAATTTAAGGGGCCCTTCATCTCTTAAAGATGATGAAGCCAGCCTGCAAAGGGAATTGAGAAATGCTGAGTGCATGGCATCTTTAGCTTCTTGTGGCTTTCACAAAAGGGAAGGTTTGTTGTATACTCCACAACACCCCTCAATGTGCCTCAGTGAAGGCCAAAGCGATGGATCACTGGGATTTTCCAGCAATGTTTTGAACTCACAATACCTCAAGGCAGCACAGGAGCTGCTTGATGAAATAGTTAATGTTCGAAAGGCTTTGAAGCAAACTGGTTTAGAGAAGCAACAGAGTTTCCGTGATATTGGTTTAGATGGCTCTAAAGATTCTGATGGAAAATCTACCAGCCAATCAGGGCAGATATCTTCATGTCCCAATAGTTCTGCTGCAAACACTTCATGTGAGCTCTCACCTGCAGAACGACAAAATTTGTTGGACAAAAAGACAAAACTTTTATCCATGTTGGATGAGGTTGATAAAAGGTACAGACAGTACTGCCACCAGATGCAGATAGTGGTTTCATCTTTTGATATGGTTGCTGGTGTTGGAGCAGCTGAACCATACACCGCACTTGCGTTGCGCACAATATCGCGCCACTTCCGGTGTTTGCGCGATGCCATTAGTGGCCAAATTCAAGTGACTCAAAGGAGCCTTGGAGAACAAGAAGGAATACCTCGTCTCCGCTATGTTGATCAGCAGCTTCGGCAGCAAAAGGCCCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAATACTTCGAGCATGGCTCTTTGAGCATTTCCTTCATCCTTATCCAAAGGATTCAGAGAAAATTATGCTGGCTAGGCAAACTGGCTTAACAAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGTCTTTGGAAGCCAATGGTTGAAGAAATGTACAAAGAAGAATTTGGTGATTCTGAGATTAGCAGCAATCTATTACCATCAGAGAACACACTGAAAGCTCCAAGAGATGATGTTCAATCTTCTGACAGCAAAAGGGAAGAGTCCCAGGATAACATAATAACAGTTGATGATAGTGTTATTCAGCATCATGGGTTGAAGTTGGATCATGCCTCAGAGTTGGACAGAGGGATCCAAAGTAGTGATCATGGAGAAAATGCCATGGATCCTAGAATTGGGAAACTGCAGGGTGACCAAAGGTTCAACATTAATAACAGCAACAGTCCTTATTATGGGGAAGGCTGCATAATTGCTCCTACTCCTGCTACATATGATTTATCAGAGTTAGGTAACATTGGTGTGGGTGGACAGGTGTCACTAGCATTGGAATTGAGGAATTATGAAAGTGAAGGATTTGGCGTGTCCAATGATGAGATGCATAGAAGATGCAAGAAAACATTGGCTTCTTCCCCAGAGGCTGATTTGCTAGATTACCATTTCACAGACCAAGGAAAGCAACAAAACAAGTTTGGCAATCCTCACCTATTACACGAATTTGTTGTGTGA 1914 0.4368 MYSDQAFSSGSYADMLSGNPLLPHKYSETVGGHNELKFISSMRDTMTVQPIDEHSNAAPTADQDSFTNAGDSHSHLVPRTTQLGLVNSEQNVQNQGLSLSLGSVMPSIASVPTFPYQYPGAGFSSLMTASVPNLRGPSSLKDDEASLQRELRNAECMASLASCGFHKREGLLYTPQHPSMCLSEGQSDGSLGFSSNVLNSQYLKAAQELLDEIVNVRKALKQTGLEKQQSFRDIGLDGSKDSDGKSTSQSGQISSCPNSSAANTSCELSPAERQNLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGVGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEISSNLLPSENTLKAPRDDVQSSDSKREESQDNIITVDDSVIQHHGLKLDHASELDRGIQSSDHGENAMDPRIGKLQGDQRFNINNSNSPYYGEGCIIAPTPATYDLSELGNIGVGGQVSLALELRNYESEGFGVSNDEMHRRCKKTLASSPEADLLDYHFTDQGKQQNKFGNPHLLHEFVV* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0114 637 SMART prehox3 191 341 IPR006563 -
Pvu1g0114 637 MobiDBLite consensus disorder prediction 472 489 - -
Pvu1g0114 637 MobiDBLite consensus disorder prediction 241 267 - -
Pvu1g0114 637 Pfam Associated with HOX 197 340 IPR006563 -
Pvu1g0114 637 Coils Coil 203 223 - -
Pvu1g0114 637 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677|GO:0006355
Pvu1g0114 637 SUPERFAMILY Homeodomain-like 383 449 IPR009057 -
Pvu1g0114 637 CDD homeodomain 382 443 IPR001356 GO:0003677
Pvu1g0114 637 Gene3D - 379 456 - -
Pvu1g0114 637 MobiDBLite consensus disorder prediction 231 267 - -
Pvu1g0114 637 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677
Pvu1g0114 637 MobiDBLite consensus disorder prediction 459 489 - -
Pvu1g0114 637 SMART HOX_1 382 446 IPR001356 GO:0003677
Pvu1g0114 637 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 29 600 - -
Pvu1g0114 637 MobiDBLite consensus disorder prediction 55 74 - -
Pvu1g0114 637 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 29 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0114 Pvu-Chr1 970564 975343 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pvu1g0114 POX 5.7e-51 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0114 1 970564 975343 Pvu1g0114 1 970564 975343 ECH
Pvu1g0114 1 970564 975343 Pvu9g0624 9 10737870 10742757 PCT
Pvu9g0080 9 1212501 1213166 Pvu1g0114 1 970564 975343 PCT
Pvu9g0625 9 10744075 10746611 Pvu1g0114 1 970564 975343 PCT