Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0108 ATGCTGAAATCAGGCATGGGAATGAATGCGAGTAAGCAGGTGAAAAAAGCTGCTAAAGCAAGTTCCAGAAAGGGGTGTATGAGGGGCAAAGGAGGCCCTGAGAATGCCACTTGCACCTTCAAAGGTGTGAGGCAGAGAACTTGGGGCAAATGGGTGGCTGAGATCCGTGAGCCCAACCGTGGTGCACGCCTCTGGCTAGGCACATTTGAGACCTCTTTAGAGGCTGCCATGGCCTATGATGGTGCAGCACGCAAGCTCTACGGATCTGATGCAAAACTCAACCTCCCAGAGCTTCCTCTGCTCTTCAATTTCCAGTTTCCACCACCAAATCCTTCTCTCAACCCTCAGATCCCCCACATGCCACCACCCCCACAGCCTCAAAACCCTCAGATTCCCCTTTTCTATGATATTTTCAATCTCTCCCCCTCTGATTTCATCAACACCCTCTCCAATAACACCAACATCATCACCAACCCTGTTGTCTCCCCGCCCCCTCAGCATGCAATTGCTGATTCTGCCCCTGTGTACACCAGCGACTCTCTTGTCGCAATTCCCTCTGAATCCACCACCACCACCATGGAAATTTACCCCTCCTCCAATCCTGTGGAGATCAACAAGGTTGATCCTCTTTTGTCATTCAATGACACTCCTGACCCCATGTTTGATGAGTCCATCTGGGCTGAAGCAATTTCTCTGGATTTGCCTCTCATACCAGAAGCTGCTGGAATTTATGAAGCTGAAACCTTTCTTGAAGTGGGTCCTTGGGACTCTCTGCTGCCAACTCCCTGGTGCATGTAA 798 0.505 MLKSGMGMNASKQVKKAAKASSRKGCMRGKGGPENATCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFETSLEAAMAYDGAARKLYGSDAKLNLPELPLLFNFQFPPPNPSLNPQIPHMPPPPQPQNPQIPLFYDIFNLSPSDFINTLSNNTNIITNPVVSPPPQHAIADSAPVYTSDSLVAIPSESTTTTMEIYPSSNPVEINKVDPLLSFNDTPDPMFDESIWAEAISLDLPLIPEAAGIYEAETFLEVGPWDSLLPTPWCM* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0108 265 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Pvu1g0108 265 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 14 248 - -
Pvu1g0108 265 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Pvu1g0108 265 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 14 248 - -
Pvu1g0108 265 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Pvu1g0108 265 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Pvu1g0108 265 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Pvu1g0108 265 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Pvu1g0108 265 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Pvu1g0108 265 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0108 Pvu-Chr1 931454 932855 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu1g0108 AP2 3.8e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0108 1 931454 932855 Pvu1g0108 1 931454 932855 ECH
Pvu1g0108 1 931454 932855 Pvu9g0134 9 2059353 2060102 PCT