Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0102 ATGGCTCGCTACACCCTCTGCGCTCTCCTCCTCTTCGCCGCCGTGGCCGCCGCCGCAGGTGGGGCCAGCACCGACGCCGACGACATCCTGATCCGTCAGGTGGTGCCGGAGGGCGAGGTGGAGGACCACCTGCTGAACGCGGAGCACCACTTCTCGACCTTCAAGGCGAAGTTCGGGAAAACCTACGCGACGAAGGAGGAGCACGATCATCGCTTCGGCGTATTCAAGTCAAACATGCGCAGGGCTAGGCTTCACGCGCAACTCGACCCCTCCGCCGTCCACGGCGTCACTAAATTCTCCGATCTCACTCCGGCGGAGTTCCACCGCAAGTTCCTCGGCCTGAAACCGCTCCGCTTGCCAGCGCACGCGCAGAAGGCCCCCATCCTCCCCACCAACAATCTCCCCAAAGATTTCGATTGGAGAGACAAAGGAGCCGTCACTAACGTCAAGGACCAAGGTTCGTGTGGTTCGTGTTGGTCTTTCAGTACCACGGGGGCGTTGGAAGGAGCTCACTTTTTGGCTACTGGTGAGCTCGTGAGCCTTAGTGAGCAACAGCTTGTGGATTGCGACCACGTGTGTGATCCAGAAGAATACGGATCGTGTGACTCAGGCTGTAATGGCGGTTTGATGAACAACGCATTTGAGTACCTAATTGGGTCTGGGGGAGTACAGAGAGAAAAGGATTATCCGTACACTGGAAGAGATGGCACCTGCAAATTTGATAAAAGCAAAATTGCAGCTTCTGTATCTAATTACAGTGTGATTTCCCTTGACGAAGAACAAATTGCTGCAAATCTTGTGAAGAATGGCCCTCTTGCAGTTGCTATCAATGCAGTTTATATGCAGACATACGTAGGTGGTGTCTCTTGTCCATACATCTGTGGGAAGCATTTGGATCATGGGGTTCTTTTAGTGGGTTATGGTGAAGGTGCATATGCTCCCATTCGTTTTAAGGAAAAGCCTTACTGGATCATCAAGAACTCGTGGGGGGAGAACTGGGGAGAGAATGGATACTACAAGATCTGCAGAGGTCGAAATGTATGTGGAGTGGATTCCATGGTCTCAACTGTAGGTGCTATACATGCATCCACCCAATAA 1098 0.5273 MARYTLCALLLFAAVAAAAGGASTDADDILIRQVVPEGEVEDHLLNAEHHFSTFKAKFGKTYATKEEHDHRFGVFKSNMRRARLHAQLDPSAVHGVTKFSDLTPAEFHRKFLGLKPLRLPAHAQKAPILPTNNLPKDFDWRDKGAVTNVKDQGSCGSCWSFSTTGALEGAHFLATGELVSLSEQQLVDCDHVCDPEEYGSCDSGCNGGLMNNAFEYLIGSGGVQREKDYPYTGRDGTCKFDKSKIAASVSNYSVISLDEEQIAANLVKNGPLAVAINAVYMQTYVGGVSCPYICGKHLDHGVLLVGYGEGAYAPIRFKEKPYWIIKNSWGENWGENGYYKICRGRNVCGVDSMVSTVGAIHASTQ* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0102 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 152 163 IPR000169 -
Pvu1g0102 365 Pfam Cathepsin propeptide inhibitor domain (I29) 51 107 IPR013201 -
Pvu1g0102 365 SMART Inhibitor_I29_2 51 107 IPR013201 -
Pvu1g0102 365 CDD Peptidase_C1A 135 357 IPR039417 -
Pvu1g0102 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 298 308 IPR025660 -
Pvu1g0102 365 PANTHER CYSTEINE PROTEASE RD19C-RELATED 25 359 - -
Pvu1g0102 365 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 359 - -
Pvu1g0102 365 SMART pept_c1 134 358 IPR000668 GO:0006508|GO:0008234
Pvu1g0102 365 SUPERFAMILY Cysteine proteinases 48 356 IPR038765 -
Pvu1g0102 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 322 341 IPR025661 -
Pvu1g0102 365 Pfam Papain family cysteine protease 134 356 IPR000668 GO:0006508|GO:0008234
Pvu1g0102 365 Gene3D Cysteine proteinases 22 357 - -
Pvu1g0102 365 PRINTS Papain cysteine protease (C1) family signature 152 167 IPR000668 GO:0006508|GO:0008234
Pvu1g0102 365 PRINTS Papain cysteine protease (C1) family signature 300 310 IPR000668 GO:0006508|GO:0008234
Pvu1g0102 365 PRINTS Papain cysteine protease (C1) family signature 322 328 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0102 Pvu-Chr1 857213 859808 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0102 1 857213 859808 Pvu9g0138 9 2146871 2148733 PCT