Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0101 ATGGCTGGGTTCTTCTCTCTAGGAGGAAGGCATAACAAAGCAGAACAAGAGGAGGATCAGAGAGAGGACAACAACACCAACAACACCAACCACAACAACAGTCAATTTTTGTTCAGAAACGTTAACGAGGAGATCTACAACACCAACAAGGGCTTCGAGATATGGCCGCAATCCTCGTACCACCACAACTTCACCAACTACTACTCCTTCGGAGTGGGCCCTAGTCGCAGGAACAACGCCAACACCAACAACAGCTCCTCCAACAACGTAAACGACGACGTCTCTGTCTCTTTCTCGGATGACTCCAACCGCTTCGGCTTCACGGTCATGAGGTCCGCTGGCGGCGTGGGTGGCGGCGGAGGCGGCGGCATGAACTGTCAGGACTGCGGGAACCAAGCTAAGAAAGACTGCTCGCACCTCAGATGCAGAACCTGCTGCAAGAGTCGAGGGTTTCAGTGCCAAACTCACGTTAAGAGCACTTGGGTTCCCGCCGCCAAGCGCCGTGAACGACAGCAGCAACTAGCTACGTTGCAGCAACAAAATCAACCACCGCAGTTTCGCGGAGATCACTCTAAAAGACACAGAGAAAGTATCGAAGGTGCTGCAGCTGGTGGTTCTCTCGCTTGCGCTCCACTTCCTATCACCACCACAGGGTTGGAGGTGGGTCAATTTCCACCGGAGCTAAACTCTCCGGCGGTGTTCCGGTGTGTGAAAGTGAGTGCAATGGATGCACCGGACGAGCGTTACGCGTACCAAACAGCAGTGAACATAGGAGGGCACGTGTTCAAGGGAATTCTCTACGATCAAGGAATGGACGGTCCTTACGCCAGTGCAGGTTGCGAGGGTTCCTCCGGTGGCGGCGGTGAAGCTCGGGCACTCACTCTCATGGCCGCCACAACCACCGCCACAACAGCTGGAAACCCTTTTGACGCATCACTCTACACTGCTCCGATGAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCCCCAAGATCCTAA 1002 0.5429 MAGFFSLGGRHNKAEQEEDQREDNNTNNTNHNNSQFLFRNVNEEIYNTNKGFEIWPQSSYHHNFTNYYSFGVGPSRRNNANTNNSSSNNVNDDVSVSFSDDSNRFGFTVMRSAGGVGGGGGGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLATLQQQNQPPQFRGDHSKRHRESIEGAAAGGSLACAPLPITTTGLEVGQFPPELNSPAVFRCVKVSAMDAPDERYAYQTAVNIGGHVFKGILYDQGMDGPYASAGCEGSSGGGGEARALTLMAATTTATTAGNPFDASLYTAPMNAFMAGTQFFPPPRS* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0101 333 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 125 167 IPR006510 -
Pvu1g0101 333 MobiDBLite consensus disorder prediction 11 25 - -
Pvu1g0101 333 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 331 - -
Pvu1g0101 333 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 223 271 IPR006511 -
Pvu1g0101 333 MobiDBLite consensus disorder prediction 167 195 - -
Pvu1g0101 333 MobiDBLite consensus disorder prediction 1 34 - -
Pvu1g0101 333 MobiDBLite consensus disorder prediction 171 186 - -
Pvu1g0101 333 Pfam Domain of unknown function (DUF702) 123 272 - -
Pvu1g0101 333 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 331 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0101 Pvu-Chr1 848256 850126 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pvu1g0101 DUF702 5.6e-65 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0101 1 848256 850126 Pvu9g0139 9 2162528 2164509 PCT