Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0100 ATGCATCTCAATCACTTGGCACTTTTCATAACCATTACACAACTAAACCCCACGCTTCCTTTATTCTCCTTCTTCTCAAAACTTCACTTCCTTCTCACACAAAACCTTCAACTTCAAACCATGAAGATCCAATGCGACGTCTGTAACAAACACGATGCATCGGTCTTTTGCACCGCCGATGAAGCCGCCCTCTGTGACGGCTGCGACCACCGCATCCACCACGCCAACAAACTAGCCTCCAAACACCAACGATTCTCTCTTCTTCGGCCTAAACAACACCCTCTCTGCGATATTTGTCAGGAGAGAAGAGCCTTCACGTTCTGTCAGCAAGACAGGGCGATTCTGTGCAGGGAGTGTGACGTGTCGATTCACTCTGCCAACGAACTCACCCTTAAGCATGATAGGTTCCTTCTCACTGGTCTCAAACTTTCTGCTTCTTCTTCATCACAAGAAACTACCTCCACTTCAAACTCAGCCCCTGATTCTCTTCTTCAAGTTTCGCATCAAAAAACAACACCTTTATCTTCTTCCACCCTGAGCAAGATTGGTGTTGAAGCAGCGCCTTCCACAAGTGCTAGCAGCATATCAGAGTATTTGATAGAGACTCTTCCTGGGTGGCAGGTTGAAGACTTTCTCGATTCATATTCTGTCCCCTTTGGTTTCTCCAAGAGTGATGAAGTGTTGCCACGGTTTGATGGTGAGACGGAGGCTCATCTGGGGTCCTTCTCAACAGAGAACATGGGGATATGGGTTCCTCAAGCGCCACCACCTCTTCTGAGTTATTCACAGATGGATAAAGGAATTGGTCAAAGCGAGAGCAACATGAAAGGTAGCAGATCGAGGTTGAAGGATGATAATTTCACTGTGCCACAGATTAGTCCTCAGTCCAATTCCAAGAGAGGAAGGTTTCTATGGTAG 918 0.4684 MHLNHLALFITITQLNPTLPLFSFFSKLHFLLTQNLQLQTMKIQCDVCNKHDASVFCTADEAALCDGCDHRIHHANKLASKHQRFSLLRPKQHPLCDICQERRAFTFCQQDRAILCRECDVSIHSANELTLKHDRFLLTGLKLSASSSSQETTSTSNSAPDSLLQVSHQKTTPLSSSTLSKIGVEAAPSTSASSISEYLIETLPGWQVEDFLDSYSVPFGFSKSDEVLPRFDGETEAHLGSFSTENMGIWVPQAPPPLLSYSQMDKGIGQSESNMKGSRSRLKDDNFTVPQISPQSNSKRGRFLW* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0100 305 ProSiteProfiles Zinc finger B-box type profile. 91 138 IPR000315 GO:0008270
Pvu1g0100 305 CDD Bbox1_BBX-like 95 138 - -
Pvu1g0100 305 CDD Bbox1_BBX-like 45 87 - -
Pvu1g0100 305 MobiDBLite consensus disorder prediction 267 305 - -
Pvu1g0100 305 PANTHER B-BOX ZINC FINGER PROTEIN 21 41 302 - -
Pvu1g0100 305 Gene3D Classic Zinc Finger 40 132 - -
Pvu1g0100 305 MobiDBLite consensus disorder prediction 148 167 - -
Pvu1g0100 305 ProSiteProfiles Zinc finger B-box type profile. 40 87 IPR000315 GO:0008270
Pvu1g0100 305 Pfam B-box zinc finger 92 134 IPR000315 GO:0008270
Pvu1g0100 305 PANTHER B-BOX ZINC FINGER PROTEIN 22 41 302 - -
Pvu1g0100 305 SMART bboxneu5 40 87 IPR000315 GO:0008270
Pvu1g0100 305 SMART bboxneu5 91 138 IPR000315 GO:0008270
Pvu1g0100 305 MobiDBLite consensus disorder prediction 284 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0100 Pvu-Chr1 827263 828881 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu1g0100 zf-B_box 9.7e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0100 1 827263 828881 Pvu9g0145 9 2246018 2247600 PCT