LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu1g0096	ATGGAGGGAGAGGATGTTAGGTCTGGGACCAGGAAGAAGCGATCCAAGAAGGAAATTGGTTTTGACTCTGACGACGACGAGCCCATTGGGTCAATCTTCAAGCTGAAGAGGGCCAAGAGGAAGGGTAGTGGCAGTGGTGAGGCTGTTAGGGAGAAGGAGGATTTGGGGGGTATGGATGATAATGATACCTTGGCTAGCTTTAGGAAGAGATTGAAGGGTCCTAAGAGAGATCAGGGATCTGGGGTTGCAAGAGGACCAAGTTCTGCTTTGCATGTGTCTGATGAAGATTTGGTTGGATTGGGAGCTAAGGGTAAGGATGAGAAAGGGGTGGCCTTGGTGCCTGGTGGTGTGGACATGCAGATGCAGATGCAGGATTCTTCTGATCAACACATGGAGGATTCGTTGTCTGCGATTTTTCACAAGGCACAGTCTAGTTCTGCTAGGAAATCTCGTGTGGGTTCGAGACAGAAAAGGGGGATTCAGAAGGTGGATGGTGGGTTGAGCCCTGGTGGTTTTGTGGAAGCTGTGGATTCTGTGGTTGAAAGTAGATCCGGATCTGCTTCTGGCTCGAAATTGGTTGGGGGGAATGCCATGTCTGATGATGCTTTACCTCAAGCGTCTGAACCGGTTGTAACATCTGTGGTGGAGGATCAGAAGTGTGTTAATGACTGTTTTCAAGAGGAAATTGCGAAGGGTGAATGTGATTTGGACATTCCAGATGGATTGAATCAGCCAAAAGATGTCTATCATGATGATGGGAAGCAATTTTCTTGTGCTCTAAAAGCTGAAGATATTTCTTGTGATTCTGACCAGAAGGTTGCATTGCAGGAAAGCGTTGTTATCAGTGGTGGTTTACATAAGTTATCTTCCATGTTACTCGATGAAATAGTTGATACTGCCTATCTCTCAAAAGTGGGGGAAGGGGAAAGCCAACTTACAGAGGTCGGAGAGCCTGAGAATAGATTGACTGATGAACTAGTACAGGCATGCAACAGTGCTTCAGAACATGATGTTTCTACTTCTGCTGGAAAAGGAAATGTCTTGACATCTTGGCACACTGAACCCTTGATTAAATCAACAGAAAATGTATTGAAAGAGAATGATGATATGGTTTCTGGAAAAGGTTTTCAGGAATCCTCAAGGAATGGAGCTCTAAAGTTATCTGGATGCCACTTGGAAGTAGATGGAGGTGGAAAATCAGAAACCGAGTTTGTTTCTGATGGAAATTTATGTGATTATAGTAATTTAGATACAAAAGCTGAAGTGCAAGATTTTGTTCTAGGTTTTTCACCTAAGAGAAATGATGTAACTGTCAGTGGTTCTTCTATGGTGTCGAATGAAGCTGAATTGGATGCTCGCTCAAATCACCCAGAGAAACCTATAGAAGCTTGCAATATTCCAAAAGGCCCCACTGTTTCAATTCTGAAATGTAGCTCAGTTTTAGATCCAGTTCATTCGGATGGATCCTCTCTTCAATCTTCAATTCCAGATGAAAATGGGAACTCTGCAGAATACCATACCTCTGTCTCTGATTTTGTTGATAACGATGGTAAGATATCAGGCATTACACGGGTGGTGCGAAAGACCAAAATGCGTAAGCATGGAGACATGACATATGAGGGGGATGCTGATTGGGAGGTTTTAATTAATGATCAAACTCTAAATGAAAGTCAAGTTATGACAGATGTTGACCGCACTCTTAGGACAAGAATGAAGCATGATACCTCTTTGAATACCGGTGAAGAATCTGAAAACGTTGCAGTAGTAGCGGTATCAGCTGGGCTGAAAGCCCGTAAAGCAGGTCCAATCGAGAAAATAAAGTTTAAAGAGATCTTGAAGCGAAAAGGTGGTCTCAAGGAATATTTGGATTGCAGAAATCAAATTTTAAGTCTTTGGAGCCGAGATGTCACACGGATATTGCCTCTTGCTGAATGTGGAGTTAGTGATACTGATTATGAGGATGGAAGTCCTCGTTCTTCTCTTATTAGGGAGGTCTATGCATTTCTCGATCAATATGGTTATATAAATGTTGGAATTGCCTCCCAGAAGGAGAATGTTGGAAGTAGTGCCAGGCACTGTTATAAACTGGTAAAAGAAAAAGGTTTTGAGGAAAGTCTCGCAGCTTCAATGGCTGACTCTGAAGATGGAGTTTCCTTTCTTGTTGGGCAGACGAAAATGTCAGATACTTTCAATGAGATTAACAATGGTCTACCTAAGGATTGCAATGACCTAACAACTGAAGCTACAGAAGGCATGGGGCACAGTAATGAAGTGAAGTTGGATTTACCAAACATATCACAACAGGCAGAAGGAAAAAAAATTGATTACCAGGAAAATGATGGGTTTCAGGATGGAACTATTGACAGTTCCGTTCCTTCTTCCAACTTTGCTGATTGCAGATTAACGTCTCTGGTAGCTAAAGAGAAAAGCAATGACTCTACCTGCATTAAATCTGTCTGGGGTGGTCAGGTAGGTGACAATCTGCAGTCTGATTTAGATCCTAGAAAGAGAGTAATTGTGATTGGAGCTGGGCCTGCCGGGCTAACTGCTGCTCGCCACTTGCAACGTCAGGGATTTCCTGTAACTGTTCTTGAGGCTAGGGGTAGGATAGGAGGTCGTGTGTTTACTGATCACTCCTCACTTTCTGTCCCTGTTGATCTTGGTGCTAGCATTATAACTGGTGTTGAGGCTGATGTGGCCACTGAGAGAAGACCAGATCCTTCCTCGTTGATTTGTGCTCAGTTGGGCCTTGAGTTGACGGTGTTGAACAGTGATTGCCCTCTTTATGACATAGTGACAGAACAAAAAGTTCCTGCAGATATGGATGAAGCACTTGAAGCTGAATATAATACCCTTATAGATGACATGGTATTGGTTGTCGCTCAGAAAGGTGAACAAGCAATGAGAATGTCTCTTGAAGATGGTTTAGAATATGCCCTCAAGATTCGGCGTATGGCACGCTCTGAAAGCAGTGAAGAAACTGAACAAAATAATTCTGCAGATAGACCATTTGATTCCAAAAGGGACAGTTCTGTTGAAAAAAAGCTTGATGAGGAGATTTTGAGTCCTCAGGAGAGAAGGGTTATGGATTGGCACTTTGCTCATTTGGAATATGGTTGTGCTGCTTCACTTAATGATGTTTCTCTTCCCTACTGGAATCAAGATGACGTGTATGGAGGTTTTGGGGGAGCTCATTGTATGATTAAAGGGGGTTACAGTTCTGTTGTTGAGTCTCTGGGAGAAGGAAATACAATTCACTTGAATCATGTTGTAACAAATGTGTCATATGGGATCAGGGAGCCTGGTCAGAGTTATAAAGTCAAAGTTTCTACATCAAATGGCAATGAGTTCTTTGGTGATGCTGTCCTTGTTACTGTTCCACTTGGCTGTTTGAAGGCTGAAACTATACAATTCTCCCCACCTTTGCCACAGTGGAAATGTTCTTCTGTTCAGCGTCTTGGTTATGGAGTTCTAAATAAAGTGGCTTTGGAATTTCCTAGTGTATTTTGGGATGATGCTGTGGACTACTTTGGAGCAACAGCTGAAGAGAGAAACAGTAGAGGTCACTGCTTTATGTTCTGGAATGTCAGGAAAACAGTAGGGGCTCCTGTCCTTATTGCATTAGTGGTTGGTAAGGCAGCCATAGATGGTCAAAGCTTGAGCTCTTCCGATCATGTTAAACATGCATTGAAGGTTCTCCGAAAACTTTTTGGGCAGGATTCAGTTCCAGATCCCGTTGCCTATGTTGTGACTGATTGGGGTAGGGATCCTTTTAGCTATGGTGCTTATTCTTACGTTAAGGTTGGAGCCTCAGGAGAAGACTATGATATATTAGGGAGACCAGTTGATAACTGCTTGTTTTTTGCTGGTGAAGCTACCTGCAAAGAGCACCCAGATACTGTTGGTGGTGCAATGATGAGTGGCCTAAGAGAGTCTGTTCGCATAATTGACATATTGAGCACTGGAAATGATTATATTGCCGAGGTGGAGGCATTAGAAGCTGCACGGGGACAGTTAGATCCTGAAAGGGATGAAGTGAGGGATATAATAAAGAGACTTGATGCAGTAGAACTTTCTAACATAATGTACAAGAACTCTTTAGATGGTGCTCAAATTTTAACCCGGGAAGCTTTGTTAAGGGAAATGTTCTTTAATACGAAAACCACTGGTGGACGCTTGCATGTAGCCAAACAATTGTTAACTCTTTCTGTTGGAAACTTGAAGTCTTTTGCTGGAAGTAAAGAGGGGCTAGCCATTCTCAATTCATGGATACTGGACTCAATGGGAAAGGATGGGACCCAACTCTTGAGGCACTGTTTGCGACTTCTTGTCCGTGTTTCAACTGATCTTCTTGCTGTACGATTATCAGGAATGGGAAAAACAGTGAAGGAAAAAGTTTGTGTGCATACTAGCCGTGATATTCGTGCTATAGCAAGCCAGTTGGTCAATGTATGGCTTGAAGTTTTTCGCAAGGAAAAAGCTTCTAATGGTGGATTGAAGTTACCAAAACAAACAACTGTCTTAGATTTATCTAAGAGAAAATCTGCAAAAGATTCAGCTTTGGGAAAACCACCTCTGGGCACATATCATGGTACCATTGAGAATAAAGGAGGCTTGCTAAATCCTACCTCTGCTGGAAGCAATTCACCTTCCCATGCCCATATGAAGAAATTGCAAAGCAAACAAGGAAGACAACCAGCAGCATATGACTCAAGGCATGAAGTCAGTTCTTCCAAATCTAAAGGTTCAATAGACAGAGTAGCTACAGAGAAGGAGGATAGCCACTGTGCTATATCTGAAGAAGAACAGGCTGCTATAGCTGCTGCAGAGGCTGCCCGTGCTAAAGCTCTTGCTGCTGCTGAGGCATATGCCTCTGCAGAAGCCAGATGCAATTCGCTGTTACAGCTTCCTAAGATACCCTCATTCCACAAATTTGCTAGACGTGAGCAGTCTTCACAAAATGATGAGTGTGATAGTAAAAAAGATGGTCAGGTGGTGTTTTTGGAAGGCAAGATTGTATTTCAGAGATTGATTCTAGGAATTGCAGAGTTAGGGATTGGTCTGTTGATTTCTCCGCTGCTTGTGTCAATCTTGATAATTCCAGAATGCCTGTTGATAACCTTTCACAGAGGAGTCATTCAAATGAGATTGCCAGCCATTTGA	5163	0.4279	MEGEDVRSGTRKKRSKKEIGFDSDDDEPIGSIFKLKRAKRKGSGSGEAVREKEDLGGMDDNDTLASFRKRLKGPKRDQGSGVARGPSSALHVSDEDLVGLGAKGKDEKGVALVPGGVDMQMQMQDSSDQHMEDSLSAIFHKAQSSSARKSRVGSRQKRGIQKVDGGLSPGGFVEAVDSVVESRSGSASGSKLVGGNAMSDDALPQASEPVVTSVVEDQKCVNDCFQEEIAKGECDLDIPDGLNQPKDVYHDDGKQFSCALKAEDISCDSDQKVALQESVVISGGLHKLSSMLLDEIVDTAYLSKVGEGESQLTEVGEPENRLTDELVQACNSASEHDVSTSAGKGNVLTSWHTEPLIKSTENVLKENDDMVSGKGFQESSRNGALKLSGCHLEVDGGGKSETEFVSDGNLCDYSNLDTKAEVQDFVLGFSPKRNDVTVSGSSMVSNEAELDARSNHPEKPIEACNIPKGPTVSILKCSSVLDPVHSDGSSLQSSIPDENGNSAEYHTSVSDFVDNDGKISGITRVVRKTKMRKHGDMTYEGDADWEVLINDQTLNESQVMTDVDRTLRTRMKHDTSLNTGEESENVAVVAVSAGLKARKAGPIEKIKFKEILKRKGGLKEYLDCRNQILSLWSRDVTRILPLAECGVSDTDYEDGSPRSSLIREVYAFLDQYGYINVGIASQKENVGSSARHCYKLVKEKGFEESLAASMADSEDGVSFLVGQTKMSDTFNEINNGLPKDCNDLTTEATEGMGHSNEVKLDLPNISQQAEGKKIDYQENDGFQDGTIDSSVPSSNFADCRLTSLVAKEKSNDSTCIKSVWGGQVGDNLQSDLDPRKRVIVIGAGPAGLTAARHLQRQGFPVTVLEARGRIGGRVFTDHSSLSVPVDLGASIITGVEADVATERRPDPSSLICAQLGLELTVLNSDCPLYDIVTEQKVPADMDEALEAEYNTLIDDMVLVVAQKGEQAMRMSLEDGLEYALKIRRMARSESSEETEQNNSADRPFDSKRDSSVEKKLDEEILSPQERRVMDWHFAHLEYGCAASLNDVSLPYWNQDDVYGGFGGAHCMIKGGYSSVVESLGEGNTIHLNHVVTNVSYGIREPGQSYKVKVSTSNGNEFFGDAVLVTVPLGCLKAETIQFSPPLPQWKCSSVQRLGYGVLNKVALEFPSVFWDDAVDYFGATAEERNSRGHCFMFWNVRKTVGAPVLIALVVGKAAIDGQSLSSSDHVKHALKVLRKLFGQDSVPDPVAYVVTDWGRDPFSYGAYSYVKVGASGEDYDILGRPVDNCLFFAGEATCKEHPDTVGGAMMSGLRESVRIIDILSTGNDYIAEVEALEAARGQLDPERDEVRDIIKRLDAVELSNIMYKNSLDGAQILTREALLREMFFNTKTTGGRLHVAKQLLTLSVGNLKSFAGSKEGLAILNSWILDSMGKDGTQLLRHCLRLLVRVSTDLLAVRLSGMGKTVKEKVCVHTSRDIRAIASQLVNVWLEVFRKEKASNGGLKLPKQTTVLDLSKRKSAKDSALGKPPLGTYHGTIENKGGLLNPTSAGSNSPSHAHMKKLQSKQGRQPAAYDSRHEVSSSKSKGSIDRVATEKEDSHCAISEEEQAAIAAAEAARAKALAAAEAYASAEARCNSLLQLPKIPSFHKFARREQSSQNDECDSKKDGQVVFLEGKIVFQRLILGIAELGIGLLISPLLVSILIIPECLLITFHRGVIQMRLPAI*	1721

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu1g0096	1720	SUPERFAMILY	FAD/NAD(P)-binding domain	834	1318	IPR036188	-
	Pvu1g0096	1720	SUPERFAMILY	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	1414	1498	IPR035441	-
	Pvu1g0096	1720	MobiDBLite	consensus disorder prediction	1	101	-	-
	Pvu1g0096	1720	MobiDBLite	consensus disorder prediction	1537	1556	-	-
	Pvu1g0096	1720	PANTHER	LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3	511	1661	-	-
	Pvu1g0096	1720	PANTHER	FLAVIN MONOAMINE OXIDASE	511	1661	-	-
	Pvu1g0096	1720	MobiDBLite	consensus disorder prediction	1512	1595	-	-
	Pvu1g0096	1720	Gene3D	-	585	689	IPR036388	-
	Pvu1g0096	1720	MobiDBLite	consensus disorder prediction	1	77	-	-
	Pvu1g0096	1720	Pfam	Flavin containing amine oxidoreductase	846	1316	IPR002937	GO:0016491
	Pvu1g0096	1720	MobiDBLite	consensus disorder prediction	141	166	-	-
	Pvu1g0096	1720	SUPERFAMILY	FAD-linked reductases, C-terminal domain	1154	1265	-	-
	Pvu1g0096	1720	ProSiteProfiles	SWIRM domain profile.	586	686	IPR007526	GO:0005515
	Pvu1g0096	1720	MobiDBLite	consensus disorder prediction	1574	1595	-	-
	Pvu1g0096	1720	Pfam	SWIRM domain	599	676	IPR007526	GO:0005515
	Pvu1g0096	1720	Gene3D	-	838	1314	IPR036188	-
	Pvu1g0096	1720	Gene3D	-	944	1271	-	-
	Pvu1g0096	1720	SUPERFAMILY	Homeodomain-like	583	681	IPR009057	-
	Pvu1g0096	1720	MobiDBLite	consensus disorder prediction	987	1017	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu1g0096	Pvu-Chr1	797159	808164	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SWI or SNF-SWI3	Pvu1g0096		Amino_oxidase	2.5e-106	CL0063

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu1g0096	1	797159	808164	Pvu1g0096	1	797159	808164	ECH