Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0089 ATGGCGGTAGATAATCCTGAGGATGGATTGAAGAAGCTGGAATACTTGTCGCTTGTGTCGAAGGTGTGCACCGAGTTGGAGTCCCACACCGGCACCGGCGACAAAGTTCTAGCGGAGTTCATCACTGAGTTGGGTCGATCGTCGGAGAATGTTGAGGATTTTGACGCGAAGTTGAAGGAGAATGGTGCGGAGATGCCGGATTACTTTGTCCGAACGCTCCTCACTATTATTCACGCGATTCTCCCTCCGAAGCCGAAGGATTTGAAGAAGGAGAAAGAGAGTAGCAACGGCAAGACCAAGTTCAAGGCTCTGGCCATCGCAGACGATAGGGACCGGGCCAAGGAGCTTCGGAAGGAGATGGAATCTGAGGCCAAGGAGAAGCTGAGTGAGCAAATTGAGGAAGATGATGGGTACAGAGACAGAGATCGAAGAGATAGGCGCAGAGATAGGTATGAGGAAGATGATAGAAGGGATCACCGCAGAAGAGGAAGAGACAGAGATGATGAAGATGATAGAAGGGATTACAGCAGAAGAGGTAGAGATAGAGACGATGAAGATGATAGGAGGGATTACAGCAGAAGAGGAAGAGATAAGTATGATAAAGATAGAGATAGAGATAAAGATGGTGATAAGTATGAGAGGCGCAGGAGAGATGATTATGAAGAGAATGGGCGCGGAAGGGAGAATGGGGATAGAGAGGGGAACAGAAAGGGTACACGGCAAGTTTCTGGTGAACCTGAATTATATGCCGTTTACAAAGGGAGGGTGTCCAGGGTAATGGAGACTGGATGCTTTGTCCAGTTAGAAGACATAAGAGGGAAGGAGGGGTTGGTCCATGTGTCACAGATGGCCACTCGGAGGATCACAAATGCCAAAGACGTCATTAAGCGCGACCAGGAGGTTTATGTAAAGGTGATCTCAGTTTCGGGACAGAAGTTGTCTCTTTCCATGAGGGACGTTGATCAGCACACAGGTAAGGATCTCCTTCCGTTGAAGAAGAGCTCCGAGGATGATACCTTGAGGATGAATCCGCAGGGTTTAAGGGATGGGCCGGTTTCCAGGACAGGGCTTTCAGGTATCAGGATTGTAGAAGAAGATGATGTTGGTTCTTCGCGGAGACCTCTGAAGAGAATGAGCTCACCGGAGAAATGGGAAGCAAAACAGTTGATTGCGTCAGGTGTGATGGGTGTTTCAGAGTACCCAACTTATGATGAAGAGGGAGATGGATTGCTGTACCAAGAGGAAGGTGCTGAGGAGGAGCTTGAGATTGAGTTGAATGAGGATGAACCCGCATTCTTGCAAGGGCAGAGCAGATACTCAATGGATATGTCTCCTGTTAAGATTTTTAAGAATCCTGAAGGTTCTCTGGGTCGAGCTGCTGCACTCCAGTCTGCACTTATAAAGGAGCGGAGGGAAGTGCGAGAACAACAACAACGGACAATGCTTGATTCAATTCCGAAGGATCTCAATCGGCCTTGGGAAGACCCTATGCCAGAGTCAGGTGAAAGGCATCTTGCCCAGGAGCTTAGAGGTGTTGGCTTATCAGCCTATGATATGCCAGAATGGAAGAAGGATGCATATGGGAAAACAATTACCTTTGGGCAAAGGTCAAAGCTTTCTATTCAGGAGCAGAGGCAGAGTTTGCCAATTTACAAGTTAAAAAAAGAATTGATTCAGGCTGTGCATGATAATCAGGTGTTGGTAGTTATTGGAGAAACTGGTTCAGGTAAGACTACTCAGGTTACACAGTATCTTGCCGAAGCTGGTTATACCACTAGAGGAAAAATTGGATGTACTCAACCTCGTAGGGTGGCTGCAATGTCAGTTGCGAAGAGGGTAGCCGAAGAGTTTGGTTGTAGATTGGGAGAAGAAGTAGGTTATGCCATTCGGTTTGAGGATTGCACTGGACCAGATACTGTTATCAAGTACATGACAGATGGTATGCTTCTTAGGGAGATATTGGTCGATGAGAATCTGTCACAGTATTCTGTTATAATGCTTGACGAAGCCCATGAAAGAACTATTCATACTGATGTTCTTTTTGGACTGCTCAAGCAGCTAGTGAAGCGAAGACCTGAATTGCGATTGATTGTCACCTCTGCTACACTGGACGCTGAGAAATTTTCAGGATATTTCTTTAACTGTAACATCTTTACAATTCCCGGTAGAACTTTTCCTGTAGAGATACTTTATACTAAACAGCCCGAAAGTGATTATTTAGATGCATCTTTAATAACTGTCCTTCAGATCCACTTGACGGAGCCCGAGGGAGACGTTCTTCTCTTTTTGACTGGGCAAGAGGAGATTGATTTTGCTTGCCAATCTCTATATGAGAGAATGAAAGGATTAGGTAAGAATGTTCCAGAGCTGATCATTTTACCGGTTTATAGTGCCCTTCCTAGTGAAATGCAGTCTAGGATATTTGACCCTGCCCCTCCCGGGAAAAGGAAAGTGGTTGTGGCTACTAACATTGCTGAGGCTTCTTTGACTATTGATGGGATATTTTATGTTATTGATCCTGGATTTGCTAAGCAAAATGTTTATAACCCAAAGCAAGGTCTTGATTCTTTGGTGATAACTCCAATTTCACAAGCATCAGCCAAACAAAGAGCTGGACGGGCAGGGCGTACTGGACCTGGGAAGTGTTATCGCCTTTATACCGAGAGTGCATATAGGAATGAGATGTCTCCAACTACAATTCCTGAGATTCAAAGGATAAATCTGGGGATGACTACACTTAATATGAAAGCTATGGGGATAAATGATCTACTGTCCTTTGATTTTATGGATCCACCATCACCTCAAGCACTGATTTCTGCCATGGAGCAGCTTTATAGTCTTGGAGCATTGGATGAAGAGGGCCTTTTGACCAAATTGGGGAGGAAAATGGCAGAATTTCCTTTGGATCCACCTTTGTCCAAGATGTTGCTTGCCAGTGTGGACCTTGGATGCAGTGATGAAATTTTGACCATAATTGCCATGATCCAGACCGGTAATATATTTTACAGGCCAAGGGAAAAGCAAGCTCAAGCAGATCAGAAGAGGGCAAAGTTTTTCCAGCCAGAGGGTGATCATCTTACACTACTTGCTGTTTATGAGGCTTGGAAAGCCAAGAATTTTTCTGGGCCTTGGTGTTTTGAGAATTTCGTGCAATCCAGATCATTGAGAAGAGCACAGGATGTCAGGAAACAACTTCTCACCATTATGGATAAGTACAAATTGGATGTTGTAAGTGCTGGAAAAAACTTCACCAAAGTAAGGAAGGCTATCACTGCTGGATTCTTTTTTCATGCTGCCAGAAAGGATCCCCAAGAAGGGTACAGAACCCTAGTTGAGAACCAACCTGTGTATATCCATCCAAGTTCTGCTTTGTTCCAGAGGCAGCCAGACTGGGTCATATACCATGAGCTTGTGATGACAACTAAGGAGTATATGCGTGAGGTCACTGTCATAGACCCCAAATGGCTTGTTGAATTGGCTCCAAGATTTTTCAAAGTGGCAGATCCTACAAAGATGAGCAAGCGGAAGCGTCAAGAGCGAATTGAACCACTCTATGATAGATACCACGAGCCAAATTCATGGCGTTTGAGTAAGCGCCGTGCATGA 3606 0.4517 MAVDNPEDGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITELGRSSENVEDFDAKLKENGAEMPDYFVRTLLTIIHAILPPKPKDLKKEKESSNGKTKFKALAIADDRDRAKELRKEMESEAKEKLSEQIEEDDGYRDRDRRDRRRDRYEEDDRRDHRRRGRDRDDEDDRRDYSRRGRDRDDEDDRRDYSRRGRDKYDKDRDRDKDGDKYERRRRDDYEENGRGRENGDREGNRKGTRQVSGEPELYAVYKGRVSRVMETGCFVQLEDIRGKEGLVHVSQMATRRITNAKDVIKRDQEVYVKVISVSGQKLSLSMRDVDQHTGKDLLPLKKSSEDDTLRMNPQGLRDGPVSRTGLSGIRIVEEDDVGSSRRPLKRMSSPEKWEAKQLIASGVMGVSEYPTYDEEGDGLLYQEEGAEEELEIELNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDVLLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGMTTLNMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKVRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA* 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0089 1201 Gene3D - 244 329 IPR012340 -
Pvu1g0089 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 538 1071 IPR027417 -
Pvu1g0089 1201 MobiDBLite consensus disorder prediction 114 242 - -
Pvu1g0089 1201 Pfam Helicase conserved C-terminal domain 748 878 IPR001650 -
Pvu1g0089 1201 CDD SF2_C_RHA 725 886 - -
Pvu1g0089 1201 SUPERFAMILY Nucleic acid-binding proteins 249 325 IPR012340 -
Pvu1g0089 1201 ProSiteProfiles S1 domain profile. 249 318 IPR003029 GO:0003676
Pvu1g0089 1201 SMART ha2_5 939 1029 IPR007502 GO:0004386
Pvu1g0089 1201 SMART ultradead3 546 730 IPR014001 -
Pvu1g0089 1201 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 663 672 IPR002464 -
Pvu1g0089 1201 Pfam Helicase associated domain (HA2) 940 1028 IPR007502 GO:0004386
Pvu1g0089 1201 CDD DEXHc_DHX8 543 721 IPR044762 GO:0000398|GO:0003724|GO:0005524
Pvu1g0089 1201 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 558 721 IPR014001 -
Pvu1g0089 1201 CDD S1_DHX8_helicase 249 325 - -
Pvu1g0089 1201 Coils Coil 459 479 - -
Pvu1g0089 1201 MobiDBLite consensus disorder prediction 336 356 - -
Pvu1g0089 1201 PANTHER ATP-DEPENDENT RNA HELICASE 97 1201 - -
Pvu1g0089 1201 SMART S1_6 247 318 IPR022967 -
Pvu1g0089 1201 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1086 1161 IPR011709 -
Pvu1g0089 1201 Pfam S1 RNA binding domain 249 316 IPR003029 GO:0003676
Pvu1g0089 1201 SMART helicmild6 774 878 IPR001650 -
Pvu1g0089 1201 MobiDBLite consensus disorder prediction 114 240 - -
Pvu1g0089 1201 PANTHER - 97 1201 - -
Pvu1g0089 1201 Gene3D - 520 723 IPR027417 -
Pvu1g0089 1201 Coils Coil 106 133 - -
Pvu1g0089 1201 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 746 919 IPR001650 -
Pvu1g0089 1201 Pfam DEAD/DEAH box helicase 554 704 IPR011545 GO:0003676|GO:0005524
Pvu1g0089 1201 Gene3D - 724 898 IPR027417 -
Pvu1g0089 1201 Gene3D - 923 1022 - -
Pvu1g0089 1201 MobiDBLite consensus disorder prediction 86 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0089 Pvu-Chr1 737636 742343 Transposed