Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0085 ATGATGGCTTCCGTAGAAGAAAAGGTTAAAACTGGAGGAGTTGGAGTTGGAGCTGGAGCTGGAGCCGGAGGGGGAATGGTTGTTGGGGGTCAAACTTTGGTGGCTGAGATGAAACTGCTGAAAGAAATGCAGGAACATTCTGGGGTCAGAAAGAATTTGAATTCAGAGTTATGGCATGCTTGTGCAGGCCCTCTTGTTTCATTACCTCAGGTTGGAAGTCTTGTGTTTTACTTTCCTCAGGGACACAGTGAACAGGTGGCGGCTTCTACTAGAAGAACAGCAACGTCGCAGATTCCAAACTACCCCAATCTTCCATCTCAGTTGCTGTGTCAAGTCCAAAATGTCACACTTCATGCAGACAAGGAGACAGATGAAATCTATGCTCAAATGAGTCTCCAGCCACTGAATTCTGAAAGAGAAGCCTTTCCCATATCTGATTTTGGGCTAAAGCACAGCAAACACCCCACTGAGTTCTTCTGCAAAACTTTGACTGCCAGTGACACGAGCACACACGGCGGCTTTTCGGTTCCACGCAGGGCAGCAGAGAAGCTATTTCCTCCATTGGATTACACAATTCAACCCCCAACTCAAGAACTTGTTGTTCGAGATTTGCATGATAATACCTGGACATTTAGACATATTTACAGGGGTCAACCAAAGAGACACCTTCTCACAACAGGATGGAGTTTGTTTGTAGGCTCAAAAAGACTCAGAGCTGGTGATTCTGTTCTTTTCATCAGGGATGAAAAATCGCAATTGCGAGTTGGTGTGAGGCGTGTTAATCGTCAACAAACAACACTGCCATCATCTGTGCTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCAGCTGCCAATCGAAGTCCATTCACTATTTTCTACAATCCAAGGGCTTGTCCTTCAGAATTTGTTATTCCGCTGGCTAAATACAGAAAAGCTGTATTAGGGACTCAGGTCTCAGTTGGCATGAGATTTGGCATGATGTTTGAGACTGAAGAATCGGGTAAGCGCAGATATATGGGTACAATAGTTGGCATCAGTGATGTGGATCCTCTGAGGTGGCCTGGTTCTAAATGGCGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGTTGATAAACAGAATAGAGTTAGTGTTTGGGAGATTGAGACTCCTGAAAGCCTTTTTATCTTTCCTTCTTTGACTTCAAGTCTGAAACGGCCATTGCAATCTGGATTTTATGAAAATGAGTGGGGAACTTTGTTAAGAAGACCTTTTATGAGAGCTCCAGATAATGGAACTATGGAGCTCTCAAACTCAATGCCAAATCTCTACTCAGACCACCTGATGAAAATGCTTTTCAAACCCCAGGTTATTAACAACAATGGAGCATTGTTATCCGCCATGCAACAAGAATCTGCTGCTACAAGAAGTCCCTTTCAAGAGATGAAGACAGCACTTGCAGTAGAGAACATGCCGCTTAGAAATCTACACACTCAATCTATCCCTGACCAACACAATCCCTTAAACATGCAATCTCTGTTGAGAAATGATCAACCTGAAAAGTTGCATACTCTTGCCAAAATTGAGCTGCCTTCTGGGATGGTTACTGACAAGCCTAAGTTGGAACCTGAGGTATTACCTGATCATATGCTTGACTATCCTTCCATGGAAGGGTCCAACATTGAAAAGATGGCAACAAATCCTGTTAACCAGCAAGGCCTAGCAAACCAGTTGACGTTCCATAATCAAAACCAGACTCCTCTCACTCAATCTAGTCCATGGCCTATGCAACCTCAGCTAGAATCATCCATGCCCCATCCTCAAATGATTGACATGACTCAAGCTGAAACTGCTATGGTGAATGGCCTGCTTCCTCAGCTAGACATTGATGAATGGATGGCTTATGCTTCCTCCCAACCTATTGCCATGCCAAACAGACCAACTGGACCTTTATCTGAGTTGCAAGAACACACTTCACTTCAACCTCAAGTAGTGAATCACAATCACCCTTTACCTAATCATGAAGTGTGGGATCATTATGTCAAGAGTTTGAAGTTTTTGTCTCAAACAGACCAGCTAACCTCCATCTGTCAGCCAGGGACTTATGGCCTCAATGGCATGCCAAGTCCAAACAGTCTGAGGGACCTTTCAGCTGAGAGCAACAACCAAAGTGAGATTTGTGTCAATGTTGATGTTAGCAACAGTGTAGGTACCACTGTGGTTGATCCTTCTACTTCAAGCACCATTTTGGATGAGTTTTGCGCAATGAAGGAGAGAGAGTTTCAGAATCCAAATGATTGCATGGTGGGCAACTTGAGTTCAAGCCAGGATGTGCAATCTCAAATAACCTCGGCAAGTCTAGCTGAGTCACACGCCTTTTCTCTCAGAGACATCCCTGACAACTCAGGTGGCACTTCTTCAAGCCATGTTGATTTTGATGAAAGCAGCTTTCTACAGAATAACTCGTGGCAGCAAGTACCTGCTCCCATCAGAACTTACACAAAGGTGCAAAAGGCCGGTTCTGTTGGAAGATCAATTGATGTGACTACTTTCAAGAACTATGAGGAGTTGATCCGTGCAATTGAATGCATGTTTGGACTAGACGGTCTGCTGAATGACACTAAAGGTTCTGGATGGAAATTGGTGTATGTAGATTATGAGAGTGATGTTCTACTTGTTGGGGATGATCCTTGGGAGGAATTTGTGGGCTGTGTCCGATGCATCAGAATTTTATCACCTTCAGAAGTTCAGCAGATGAGTGAAGAGGGAATGAAGCTTCTGAACAGTGGAGCTTTACAAGGGATGAATGTTTGA 2814 0.4428 MMASVEEKVKTGGVGVGAGAGAGGGMVVGGQTLVAEMKLLKEMQEHSGVRKNLNSELWHACAGPLVSLPQVGSLVFYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNVTLHADKETDEIYAQMSLQPLNSEREAFPISDFGLKHSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKAVLGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQVEWDEPGCVDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQSGFYENEWGTLLRRPFMRAPDNGTMELSNSMPNLYSDHLMKMLFKPQVINNNGALLSAMQQESAATRSPFQEMKTALAVENMPLRNLHTQSIPDQHNPLNMQSLLRNDQPEKLHTLAKIELPSGMVTDKPKLEPEVLPDHMLDYPSMEGSNIEKMATNPVNQQGLANQLTFHNQNQTPLTQSSPWPMQPQLESSMPHPQMIDMTQAETAMVNGLLPQLDIDEWMAYASSQPIAMPNRPTGPLSELQEHTSLQPQVVNHNHPLPNHEVWDHYVKSLKFLSQTDQLTSICQPGTYGLNGMPSPNSLRDLSAESNNQSEICVNVDVSNSVGTTVVDPSTSSTILDEFCAMKEREFQNPNDCMVGNLSSSQDVQSQITSASLAESHAFSLRDIPDNSGGTSSSHVDFDESSFLQNNSWQQVPAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSGALQGMNV* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0085 937 Gene3D - 323 395 - -
Pvu1g0085 937 ProSiteProfiles PB1 domain profile. 831 915 IPR000270 GO:0005515
Pvu1g0085 937 Pfam Auxin response factor 285 368 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pvu1g0085 937 PANTHER AUXIN RESPONSE FACTOR 5 40 935 - -
Pvu1g0085 937 SMART B3_2 159 261 IPR003340 GO:0003677
Pvu1g0085 937 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 40 935 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pvu1g0085 937 Gene3D - 156 260 IPR015300 -
Pvu1g0085 937 Gene3D - 828 920 - -
Pvu1g0085 937 ProSiteProfiles B3 DNA-binding domain profile. 159 261 IPR003340 GO:0003677
Pvu1g0085 937 SUPERFAMILY CAD & PB1 domains 833 910 - -
Pvu1g0085 937 Pfam AUX/IAA family 829 918 IPR033389 -
Pvu1g0085 937 SUPERFAMILY DNA-binding pseudobarrel domain 147 288 IPR015300 -
Pvu1g0085 937 CDD B3_DNA 158 259 IPR003340 GO:0003677
Pvu1g0085 937 Pfam B3 DNA binding domain 159 260 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0085 Pvu-Chr1 704238 709592 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pvu1g0085 AUX_IAA 6e-11 CL0072