Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0082 ATGGGAGTTCCAGCTTTCTACCGGTGGCTGGCGGAGAAGTATCCGATGGTGATTGTGGATGCGATTGAAGAGGAAGCTGTCGTCATCGATGGGATTCAAATCCCCGTCGATACGAGCAAAGAGAACCCTAACAACATCGAATACGATAACCTCTACCTCGACATGAATGGCATCATTCATCCCTGCTTCCACCCCGAGGATAGGCCTTCTCCGACCTCGTTCGATGAGGTGTTTGAGTGCATGTTCGACTACATTGACAGGCTGTTTGTTATGGTGCGGCCGCGGAAGCTGCTCTACATGGCTATTGATGGTGTTGCGCCGAGGGCGAAAATGAACCAGCAACGGTCTAGACGGTTTAGGGCTGCGAAAGATGCAGCTGACGCGGCTGCTGAAGAAGCAAGGTTAAGGGAGGAATTTGAGAAGGAGGGCAGAAAGCTTCCTCCTAAAGGAGAGTCTCAGACTTTTGATTCAAATGTCATTACACCTGGAACTGAATTTATGGCTGTTTTGTCAATTGCACTTCAGTACTATGCTCATCTTAGGTTGAACAATGACCCTGGTTGGCAAAATATTAAGGTTATTCTTTCTGATGCAAATGTTCCTGGTGAAGGGGAGCATAAGATTATGTCCTATATCCGCTTGCAGAGAAATCTTAAAGGTTTTGATCCAAATACACGACATTGCCTATATGGTTTGGATGCCGATTTGATTATGTTGGCATTGGCTACCCATGAAGTTCATTTTTCAATTCTTAGAGAGGTTGTATTTACTCCTGGACAAGACAAATGCTTCCTCTGTGGTCAGATGGGCCATATGGCAGCAAACTGTGAAGGAAAGGCAAAAAGGAAGGAAGGAGAGTTTGATGAAAAAGGAGAGGCTATCGTGAAAAAACCATACCAGTTCCTGAATATTTGGACTCTCAGAGAATATCTAGAGTATGAGATGAGAATACCTAATCCCCCTTTCGAGTTTGATTTTGAATGCATTGTGGATGATTTTATCTTCATATGCTTTTTCGTCGGCAATGATTTTCTTCCACATATGCCTACCCTAGAGATCCGTGAGGGTGCAATCAACTTGCTGATAGCAGTATACAAGAAGGAATTTAGGGAATTGGGTGGTTATTTAACCAATGGTAGCACGATAAATTTGAGCAGAGTGGAGCACTTCATTCAGGCTGTTGGATCTTATGAAGATAAAATATTCCAGAAAAGAGCTCGATTGCATCAGCGACAAACGGAAAGAATAAAGCGTGAAAAGGCACAGGCAAGAAGGGGAGATGATACTGAGCCTCAGTTTCAACCAGAGTCTTTAGTTGCAGTTTCACGATTCCATGGTTCTCGTCTTGCTTCAGCTCCAACACCATCGCCATTTCAGCAATCTGGGCATTATAATTCTCAAGTGTCCTCATCAGTTACAAAATACGATAAAGAAACCTCTCAGAGGCCTCAGAAAGTTGCTAGGTTGTCTTCAGGAGCAACTCTTGCTGCTGCTATTGTTGAAGCCGAGAGTAGTGTTGAAATAGAAGCTCAAGATAATAAAGATGAATTGAAAACAAAATTGAAGGAGATACTTCGTGAGAAATCTGATGTATTCAACTCAAAAAATGCTGAAGAGGACAAGATTAAGTTGGGAGAACCGGGCTGGAAAGAGAGGTATTATGAGGAAAAATTTTCTGCTAAAACTCCTGAGGAACTTGAAGCGATAAGGAAAGATGTTGTCTTGAAGTACACTGAAGGCTTATGTTGGGTGATGCGCTATTATTACGAAGGTGTTTGTTCTTGGAATTGGTTTTATCCATATCACTATGCCCCTTTTGCGTCTGATCTCAAGGACCTTGGTGAACTTGATATTAGCTTTAATCTGGGTACGCCATTCAAACCATTTGACCAGCTTCTAGGGGTCTTTCCTGCTGCAAGCTCTCATGCTCTTCCTGAGCCGTATAGGAGACTTATGTCAGAACCAAACTCACCTATCATTGATTTTTATCCTGTTGACTTCGAAGTTGACATGAATGGAAAACGCTTTGCTTGGCAGGGTATTGCTAAGTTACCTTTTATTGATGAAAAGCGTCTTCTTGCAGAAGTTGAGAAGATTGAAATTTTTTTAACACCAGAGGAGAAGAGACGGAATGCTATAATGTTCGATTTGCTCTTTGTGAATTCTTGTCACCCTCTCTCTGCATGCATAAGTACACTGGACAATAAGTGTAAAAACATGTCAAACAGTGAACGGGCTGTGGTGAAGGAAAAAATCAATCCCAAAGAAAGTGGTGGAATGAATGGTTACATATCTTTATGTGGTGGAGAACCTTGCCCTCCTATCTTTAGGTCTCCTGTTGCAAGCATGGAAGATATCATGGACAATCAAGTTATATGCGCAATATATAGACTCCCAGATGCTCATGAACATATTACCCGACCACCACAAGGAGTTAAATTTCCTATTAAGACTGTGACCATTGGGGATCTAAAACCTGAACCAGTTTTATGGCATGAAGATTCAGGTAGGAGACACCATGCTGAAAATGGGAGGAGAAACCCTCCAGGTTCTTCTGGTCGTGAGCTTGGAGATGCTGCACACAGATTCATTGTCAATTCCTTACAGGCGAAGGTTGTCTCCAATGGCTACCGTCACCCACATAATGGACCTCCTATATCTTATCCTGCACCAATGGGTCATCGACCACCGGTGTCTTCCTATGGTTATGAATCACACCCAGGATACGTTGCAATGCCACCTGCTTCTTCTCCCTCACTCCAAGGCAGACCCCAGTTTGCACCTTACAATGCTGTCCCTCCTGCTCAGCAGTATGGCTATAATCAACGATACCTGCCATCCCCAGTACCCTACAATCCTCATCAGCCATCAAATGACTATCAACACCCTACATCTCATCATTATGAAAGAAATCACTATCAAGGTAGTGGGGGTAGTTTAAGGCATGGCCATCAATCGTCAGGATATAATCAGAATGCCAGGTTTATGAATAATAATACCCAAGGTGCATATGGTAGTCACCAACATGATGTTATTCACCACAACCCAAACTTTCAACCATCTAGAACTCATCAGAATTGGACTCCACGAAACAACCAGAGTGGAAACAGGGAATATGGTCATCATTCCTCCAATCAATTTGCTTTACTAGATAGAAGAGGAAACAGGAATCCAATGCCACCACCTGGTTACGATCACAACTAA 3204 0.4298 MGVPAFYRWLAEKYPMVIVDAIEEEAVVIDGIQIPVDTSKENPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTSFDEVFECMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEARLREEFEKEGRKLPPKGESQTFDSNVITPGTEFMAVLSIALQYYAHLRLNNDPGWQNIKVILSDANVPGEGEHKIMSYIRLQRNLKGFDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQDKCFLCGQMGHMAANCEGKAKRKEGEFDEKGEAIVKKPYQFLNIWTLREYLEYEMRIPNPPFEFDFECIVDDFIFICFFVGNDFLPHMPTLEIREGAINLLIAVYKKEFRELGGYLTNGSTINLSRVEHFIQAVGSYEDKIFQKRARLHQRQTERIKREKAQARRGDDTEPQFQPESLVAVSRFHGSRLASAPTPSPFQQSGHYNSQVSSSVTKYDKETSQRPQKVARLSSGATLAAAIVEAESSVEIEAQDNKDELKTKLKEILREKSDVFNSKNAEEDKIKLGEPGWKERYYEEKFSAKTPEELEAIRKDVVLKYTEGLCWVMRYYYEGVCSWNWFYPYHYAPFASDLKDLGELDISFNLGTPFKPFDQLLGVFPAASSHALPEPYRRLMSEPNSPIIDFYPVDFEVDMNGKRFAWQGIAKLPFIDEKRLLAEVEKIEIFLTPEEKRRNAIMFDLLFVNSCHPLSACISTLDNKCKNMSNSERAVVKEKINPKESGGMNGYISLCGGEPCPPIFRSPVASMEDIMDNQVICAIYRLPDAHEHITRPPQGVKFPIKTVTIGDLKPEPVLWHEDSGRRHHAENGRRNPPGSSGRELGDAAHRFIVNSLQAKVVSNGYRHPHNGPPISYPAPMGHRPPVSSYGYESHPGYVAMPPASSPSLQGRPQFAPYNAVPPAQQYGYNQRYLPSPVPYNPHQPSNDYQHPTSHHYERNHYQGSGGSLRHGHQSSGYNQNARFMNNNTQGAYGSHQHDVIHHNPNFQPSRTHQNWTPRNNQSGNREYGHHSSNQFALLDRRGNRNPMPPPGYDHN* 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0082 1067 MobiDBLite consensus disorder prediction 834 856 - -
Pvu1g0082 1067 PANTHER 5'->3' EXORIBONUCLEASE 1 1007 IPR027073 -
Pvu1g0082 1067 MobiDBLite consensus disorder prediction 978 1051 - -
Pvu1g0082 1067 Coils Coil 122 142 - -
Pvu1g0082 1067 MobiDBLite consensus disorder prediction 412 435 - -
Pvu1g0082 1067 MobiDBLite consensus disorder prediction 452 477 - -
Pvu1g0082 1067 Gene3D - 612 713 - -
Pvu1g0082 1067 SUPERFAMILY Retrovirus zinc finger-like domains 258 284 IPR036875 GO:0003676|GO:0008270
Pvu1g0082 1067 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Pvu1g0082 1067 Pfam Xrn1 helical domain 324 823 IPR041412 -
Pvu1g0082 1067 Gene3D - 147 383 - -
Pvu1g0082 1067 Gene3D - 1 137 - -
Pvu1g0082 1067 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Pvu1g0082 1067 PIRSF Exonuclease_Xrn2 1 1049 IPR017151 GO:0004534|GO:0005634|GO:0006139
Pvu1g0082 1067 MobiDBLite consensus disorder prediction 940 1067 - -
Pvu1g0082 1067 MobiDBLite consensus disorder prediction 448 487 - -
Pvu1g0082 1067 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Pvu1g0082 1067 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Pvu1g0082 1067 MobiDBLite consensus disorder prediction 412 431 - -
Pvu1g0082 1067 Coils Coil 507 527 - -
Pvu1g0082 1067 CDD PIN_XRN1-2-like 51 311 - -
Pvu1g0082 1067 PANTHER 5'-3' EXORIBONUCLEASE 1 1007 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0082 Pvu-Chr1 628378 641920 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0082 1 628378 641920 Pvu1g0082 1 628378 641920 ECH