Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0062 ATGGCAGAAGTGGAACTAGTTCCTGAACAAGGCGTGGCATCTAAAACGGACCAACAAACCAAAACTGAGAGTGTGTCGTTTTTTGGCTTGTTTGCTACTGCTGATTCAACTGACTGTGTCTTGATGTTCCTTGGAAGTGTTGGTTCGTGTCTCCACGGTGCTGCTCTTCCTGTTTTCTTCATTTTGTTTGGTCGCATGATTGACTCTTTGGGACATCTTTCCAATAACCCTCACAAATTGTCCTCGCGAGTTTCTGAGCATGCTTTGTATTTGGTCTACCTTGGAGGAGTTGTTCTGGTATCTGCTTGGATGGGGGTAGCATTCTGGATGCAAACAGGGGAGAGGCAAACGGCACGTTTGCGTTTGAAGTATTTGCAGGCAGTGCTAAGGAAGGATATTGATTTCTTTGACAATGAAGCCAGGGATTCTAATATCATTTTCCACATCTCAAGTGATGCAATACTGGTACAAGATGCCATTGGTGACAAGACAGGCCACACCATTCGTTACCTTTCTCAATTCATTGTTGGATTTGCCATTGGATTTATCTCAGTGTGGCAGCTCACACTACTCACCTTGGCTGTGGTTCCACTCATAGCTCTAGCTGGGGGAGCTTATACAATAATCATGTCTACTTTATCAGAAAAGGGTGAAGCAGCTTATGCAGAGGCTGGGAAGGTTGCAGAAGAGGTGATTTCTCAAGTGCGTACTGTTTACTCATTTGTAGGAGAAGAGAAAGCAATTGGTTCATACTCAAAGTCTCTGGATAATGCTCTGAACTTGGGCAAGAAGGGTGGTCTGGCAAAAGGAGTTGGAGTAGGCTTCACATATGGCTTGTTATTTTGTGCTTGGGCATTGCTTCTATGGTATGCTAGCATACTTGTGAGGCATCACAAGGCAAATGGAGGAAAAGCGTTCACAACAATTATCAATGTCATCTTTAGTGGATTTGCTCTTGGTCAAGCTGCTCCAAATCTTGGTTCCATTGCCAAAGGGCGTGCTGCTGCAGCCAATATCATGAACATGATTGCATCCGCTTCAAGCAATTCTAAAAGGTTGGATCATGGCACTGTTGTGCCACTAGTTACTGGTGAAATTGAATTTTGTGAGGTCTGTTTTTCTTATTCCTCAAGATCCAATATGATCTTTGAAAAATTGAGCTTCTCAGTGAGTGCTGGCAAGACTATAGCAGTTGTTGGTCCCAGTGGTTCCGGAAAGAGCACGATTGTTTCCCTTATTCAACGGTTCTATGACCCCACTTCAGGTAAGATCCTGTTGGATGGATACGACCTAAAGAATCTTCAATTGAAGTGGTTGAGAGAACAGATGGGGTTGGTTAGTCAAGAACCAGCACTATTTGCAACAACAATAGCTGAAAATATTTTATTTGGAAAAGAAGATGCAGACATGGATAAAGTCATACAAGCTTCCATGGCTGCAAATGCCCATTCTTTTATTCAAGCATTGCCTGATGGTTATCAAACTCAGGTTGGAGAGGGTGGCACTCAACTTTCAGGGGGGCAAAAGCAGAGAATTGCCATTGCAAGAGCTGTGCTCAGAAACCCAAAAGTATTGCTTTTAGATGAGGCCACAAGTGCTCTAGATTCTGAATCAGAACTCATTGTGCAACAGGCATTGGAAAAAATAATGTCAGACAGAACAACAATAGTTGTTGCTCATAGATTATCCACCATACGCGATGTAGACACAATAATTGTGTTGAAGAATGGCCAAGTGGTTGAAAGTGGAACTCATTTGGAATTGCTGTCCAACAATGGAGAGTATGTGAATCTGGTAAGTTTGCAGGCATCACAAACCCTCTCAAACTCCAGATCAATATCTCGCTCTGAAAGTTCAAGAAATTCTAGTTTTAGAGAACATTCAGACAACCTTACCCTAGAGGAGCAGCTGATGTTGGACACAAGAGGAGAACTGCAATCAAGTGATCAGCACTTGCCATCAAAGACAACTTCAGCAGCTCCAACAATTTTGGATTTGCTGAAACTGAATACTCCAGAGTGGCCCTATGCAGTACTTGGGTCGGTAGGTGCAATATTGGCTGGCATGGAAGCACCTCTCTTTGCACTTGGAATCACTCACATTTTGACTGCATTTTATTCTCCTCAGAGTTCTAAAATCAAGCAAGAAGTAGATAGGGTTGCTCTTATATTTCTTGGAGTGGCTGTTATCACTATACCTATTTATCTACTGCTTCACTACTTCTATACATTGATGGGAGAGCATCTCACTGCCCGTGTACGTTTGTTAATGTTCTCAGCTATTCTGAACAATGAAGTTGCATGGTTTGATAAGGATGAGAACAACACTGGCTCACTGACAGCCATGCTAGCTGCGGATGCAACATTAGTGAGAAGTGCTCTAGCTGACAGACTCTCAACCATTGTGCAAAATGTAGCTCTCACTGTCACAGCTTTTGTTATTGGCTTCACATTGAGTTGGAAACTAACAGCAGTGGTTGTAGCATGCCTTCCCCTTCTCATAGGAGCTTCTATCACTGAGCAACTATTTCTCAAGGGGTTTGGAGGAGATTATAACCATGCTTACTCTAAAGCAACTTCTTTGGCTCGTGAAGCTATTGCCAACATACGAACTGTTGCTGCATTTGGCGCAGAAGATAGAATCTCAATCCAGTTTGCATCTGAATTGGACAAACCCAACAAACAAGCTCTTCTAAGGGGCCACATATCAGGTTTTGGCTATGGCATAACCCAGCTATTGGCTTTCTGCTCCTATGCACTTGGCCTTTGGTATGCATCAGTTTTAATCAAGAAGAAAGAGTCAAATTTTGGGGACATCATGAAGTCCTTCATGGTCTTAATCATCACTTCTCTGGCAATAGCAGAAACACTAGCTCTTACCCCAGACATTGTCAAGGGATCACAGGCACTGGGATCAGTTTTTGGCATTCTCCAAAGGAGAACTTCCATCACCCCAAATGATCCCAGCTCAAAGATTGTAACTGTTCTAAAAGGAGAGATAGAGTTTAGAAACGTTAGCTTCAAGTACCCTATGAGACCTGACATCACCATATTCCAGAACTTGAATCTCAGAGTCACAGCAGGGAAGAGTCTAGCAGTAGTGGGACAAAGTGGTTCAGGGAAAAGCACAGTGATTTCTTTGGTGATGAGATTTTATGACCCTGATTCTGGATCAGTCCTGATAGATGAATGTGACATCAAAAGCCTAAACCTGAGATCATTAAGGATGAGAATAGGATTGGTTCAGCAAGAACCTGCTTTGTTCTCAACCACAGTTTATGAAAACATTAAGTATGGAAAAGAGGAGGCATCAGAAATAGAGGTAATGAAGGCAGCCAAAGCAGCAAATGCTCATGAATTCATCAGTAGAATGCCTAAAGGGTATGAAACTGAGGTAGGTGAGAGAGGGGTGCAGTTGTCAGGAGGACAAAAACAAAGAGTTGCAATTGCTAGAGCCATTCTGAAAGATCCATGCATTCTTTTGTTGGATGAAGCCACAAGTGCTCTAGACACAGTATCAGAGAGGCTGGTGCAAGAGGCTCTAGATAAACTGATGGAAGGTAGAACAACAATTTTGGTAGCTCACAGGCTTTCAACTGTTCGTGATGCAGACAGCATTGTAGTGCTGCAAAATGGCAGGGTTGCTGAAATGGGAAGCCATGAGAGGCTCATGGCCAAACCTGGAAGCATCTACAAGCAATTGGTTAGTCTACAGCATGAAAAGCCAGAGCAAGAAGACCATTGA 3744 0.43 MAEVELVPEQGVASKTDQQTKTESVSFFGLFATADSTDCVLMFLGSVGSCLHGAALPVFFILFGRMIDSLGHLSNNPHKLSSRVSEHALYLVYLGGVVLVSAWMGVAFWMQTGERQTARLRLKYLQAVLRKDIDFFDNEARDSNIIFHISSDAILVQDAIGDKTGHTIRYLSQFIVGFAIGFISVWQLTLLTLAVVPLIALAGGAYTIIMSTLSEKGEAAYAEAGKVAEEVISQVRTVYSFVGEEKAIGSYSKSLDNALNLGKKGGLAKGVGVGFTYGLLFCAWALLLWYASILVRHHKANGGKAFTTIINVIFSGFALGQAAPNLGSIAKGRAAAANIMNMIASASSNSKRLDHGTVVPLVTGEIEFCEVCFSYSSRSNMIFEKLSFSVSAGKTIAVVGPSGSGKSTIVSLIQRFYDPTSGKILLDGYDLKNLQLKWLREQMGLVSQEPALFATTIAENILFGKEDADMDKVIQASMAANAHSFIQALPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKVLLLDEATSALDSESELIVQQALEKIMSDRTTIVVAHRLSTIRDVDTIIVLKNGQVVESGTHLELLSNNGEYVNLVSLQASQTLSNSRSISRSESSRNSSFREHSDNLTLEEQLMLDTRGELQSSDQHLPSKTTSAAPTILDLLKLNTPEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPQSSKIKQEVDRVALIFLGVAVITIPIYLLLHYFYTLMGEHLTARVRLLMFSAILNNEVAWFDKDENNTGSLTAMLAADATLVRSALADRLSTIVQNVALTVTAFVIGFTLSWKLTAVVVACLPLLIGASITEQLFLKGFGGDYNHAYSKATSLAREAIANIRTVAAFGAEDRISIQFASELDKPNKQALLRGHISGFGYGITQLLAFCSYALGLWYASVLIKKKESNFGDIMKSFMVLIITSLAIAETLALTPDIVKGSQALGSVFGILQRRTSITPNDPSSKIVTVLKGEIEFRNVSFKYPMRPDITIFQNLNLRVTAGKSLAVVGQSGSGKSTVISLVMRFYDPDSGSVLIDECDIKSLNLRSLRMRIGLVQQEPALFSTTVYENIKYGKEEASEIEVMKAAKAANAHEFISRMPKGYETEVGERGVQLSGGQKQRVAIARAILKDPCILLLDEATSALDTVSERLVQEALDKLMEGRTTILVAHRLSTVRDADSIVVLQNGRVAEMGSHERLMAKPGSIYKQLVSLQHEKPEQEDH* 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0062 1247 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 678 965 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu1g0062 1247 CDD ABC_MTABC3_MDL1_MDL2 1000 1238 - -
Pvu1g0062 1247 CDD ABC_6TM_Pgp_ABCB1_D1_like 42 339 - -
Pvu1g0062 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 602 IPR027417 -
Pvu1g0062 1247 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524
Pvu1g0062 1247 Gene3D - 992 1247 IPR027417 -
Pvu1g0062 1247 CDD ABC_MTABC3_MDL1_MDL2 366 602 - -
Pvu1g0062 1247 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 43 331 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu1g0062 1247 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 26 468 - -
Pvu1g0062 1247 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 446 561 - -
Pvu1g0062 1247 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 544 1238 - -
Pvu1g0062 1247 Gene3D ABC transporter type 1, transmembrane domain 89 974 IPR036640 GO:0005524|GO:0016021
Pvu1g0062 1247 SUPERFAMILY ABC transporter transmembrane region 39 339 IPR036640 GO:0005524|GO:0016021
Pvu1g0062 1247 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1000 1236 IPR003439 GO:0005524
Pvu1g0062 1247 CDD ABC_6TM_Pgp_ABCB1_D2_like 667 983 - -
Pvu1g0062 1247 SUPERFAMILY ABC transporter transmembrane region 666 978 IPR036640 GO:0005524|GO:0016021
Pvu1g0062 1247 Pfam ABC transporter transmembrane region 682 951 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu1g0062 1247 Pfam ABC transporter transmembrane region 43 315 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu1g0062 1247 Gene3D - 364 623 IPR027417 -
Pvu1g0062 1247 SMART AAA_5 392 578 IPR003593 -
Pvu1g0062 1247 SMART AAA_5 1027 1213 IPR003593 -
Pvu1g0062 1247 Pfam ABC transporter 384 532 IPR003439 GO:0005524
Pvu1g0062 1247 Pfam ABC transporter 1019 1167 IPR003439 GO:0005524
Pvu1g0062 1247 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 544 1238 IPR039421 -
Pvu1g0062 1247 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 26 468 IPR039421 -
Pvu1g0062 1247 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 446 561 IPR039421 -
Pvu1g0062 1247 ProSitePatterns ABC transporters family signature. 1139 1153 IPR017871 GO:0005524
Pvu1g0062 1247 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 366 601 IPR003439 GO:0005524
Pvu1g0062 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 990 1238 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0062 Pvu-Chr1 502277 508483 Dispersed/Transposed