Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0057 ATGACTCTTGAAGATTTCTTTACGTTGACTGAAATGAAAGATGGCCTCACGGCCCCTTCTCGAGTGCAAGAATTGGTCTCTGTAATGAAGAAGGAACAAGATCGTGTTGTTAAAAATGCTGGTGATGCGACAAGGCAGTGGGCTGCTGTTGCAAGCACTATTGCTGCTACAGAGAATAAAGATTGTCTTGATCTTTTTGTTCAATCTGATGGACTTTGGTTCATCAACAGATGGTTAAAGGATGCCCAAAATTTGGGTGCTGATAATACAAATGATGGCTTCATTGAAGAGTCAATTACTGCAATGTTGCGAGCAGTTGAAAAACTATATTTAGACAGCGAAAAGTCAATTTCATCTGGAATTTCGGTAACTGTTAATAACCTTCTTGGCCATCACAGCTCTAAAGTGCAGGATAGAGCAAGAGCATTATTTGAGCACTGGAAAGGAGGTGGACTTGGAGATGCTGATAATTCAGATCTTGATAGACTCAACAATGAGAGTGATAAGATTGTCAGGGAGGAAGGCCAGCCATCTTGTGTGAATGAAGCTGGCAATGACAATCATCTTCCATCTCAGCTTGCTGGAGATGAGAAGTCTCTATTGGGAGGCTCAAATAGTCAGCTACAAGAGAAAGTTTCTAGTATTCAGATACAGAGTATTGACAATGCACTTCAGTCCTCTGTAAGTTTGGATTGTGAAGATATCAAAGAGAAATCAAGCCATGTTGCTTCTGCTCAAGAATCGACCTTACGTGAAGGTGAGACCACATTGGCTGGGACGTGTAGCTTACCTATTACTAAACAAGGCAGTTTCAAAGGACAACAAGATGATTTACAGTTAAGTGACTTGTCCAAAAAGGAGAAGCAAGATCAAGATGTTAATGGTCCTCCTGAAGAATTAAGAGCATCAGATATCTCTTCTGAATCTGCAAAGCCAGATCCTGAACCCGCTTCCACTGGTGATAGTGAAGCAAAAGCACTGGAATCTGTTAAAGAAGAACCTGCTTTAGAACATAACGTTGAAAGCAATGAAAAAGTTGTTTTTCCCAAAATAAGTGTTTCTGGTAGCATGAGAACGCCTGAATCTGATGGAATGAGTGAGATGGATGATTTCAGAGCTACAAGCTCTAGCAATCCACAACTTCCCAAAGCATCAGAAACTGATGATGACAGTTGTTCAAAAATGTTGCCTGACTTATCTGTTACTGGAAGTAACTTGGAAAAGCCTGAGATGTCTTTCATCAAATCAGAATACATCATAGCAGTAAAGGAAATCAAGGACCAAGAGTCTGATCAAGATGATGATACATCAAATGGTTCTGATTCTTTTAATCAGGGCAAAGGTCACAGAAGCCCTAACATTAATGACAAGAGTTCTGACATGGAAATTGAATACGGTAATGTTGATGCTTTAGAAGTTGCCCGACTAGTTGCTCAAGAAGTTGAGAGAGAATGTGTCAGCCCTGTAAAGGAAGGGAATGACCATGGTTCTAATCGAACGACAAATGGTTCTGATTCTTTTAAATGGCGAAATGGTCCCAAAAGCCCTAATGTTATTGGTAAGAGTTGTGAAATTGAACTTGAGTATGGTATGGTTGATGCTTTAGAAGTTGCCCGACAAGTTGCTCAGGAGGTTGAGAGAGAAGTTTCCAGCTCTTCAGAGAAAATCTCCAAAGGTGGAATTAGGCAGAGAGGCAGCCTTGATTCTGTAGGGAGAAAGGATGAGGTTACTCGAATCCTGCCTGAGGAAGTATCATCCAGGCAAAGCAACTCTGCTGAAGTGTGTTCCGAAGAGGTCGGACATATGACTGTTTCAGATAATGTTGAGGCCGGGCCTGATGACTTGGACTCCTCGCAGGTAACTGAAGCAGCTCAAGACCCAGGAGGTAATTCAGAGAAAAGTCTCTGTACCTTTGATCTCAATGAAGAAGTTGTTTCTGATGATATGGATGTTTCTGTAAATGCTATGTCTACTGTGCCAATACCTGTTGTCTCTGCTTCAAAACCTGCTCAGTCTTCTGGGTTACCAATGGCTCCTTTGCAGTTTGAGGGGACCCTCGGATGGAAAGGATCAGCTGCCACCAGTGCCTTTCGTCGTGCATCACCTCGTAGAAATTCTGATGGTGAGAAGAATGTTTCTATTGGTAGAAACTCAGAGATTTCCAAACAGAGGCATTGTTGCCTTGATTTTGATTTGAATGTGGCTGAAGGTGAAGAAGGATTGGTAAAACAAATTGGTGAATCTTCAGGCCTTCCTTCTGGTCAATCATCAGTGGAACTTAGTCCTAAAAGAACAAACCGATTCGAATTGGACTTAAACAGTATTGGTGATGATGGTGATGCCCAACCTTCAGATCAGAGGATGGAGGGCCCACTCTTTTCCGGAAGAAATGGTTATTGGAGCCCATCACCTGCTTCTTCATCGTCATCAATGCAACCTTCAGTACGGAACATTGATTTGAACGACAGACCATACTTTCAAACGGATCTAGTGGAGTCATCATATAAACGGTCTAAATTGGATGCTTCTGTTATCTCTATTTTGGGTGCCAAGGTGGAAGTTGGTAGAAGAGAATATGTTCCTCAAACTTTGTCGTTGCCAAATGGCAAGGCTATTGAGCCAGCAATGGATCATCCATTGTCAGGAGCAGGTGGCATTTTAGGAATGGGTCCCCCACTATCCTACAATCATTCAAATGCTTTTGGGTATAATGGACTTACATCAGTGCCTGCTTTGTCTTTTTCGTCAGCCATGTATGGACCTTCTGGTGGCCCAATTCCGTACATGGTAGACTCTAGAGGAACTCCAGTTATGCCTCAGGTTGGGGGATCTTCCTCTACCGTTCTCTCATCTTATACTCAGCCTCCATTTATCGTAAGCATGACCAGAACGCAGTTTGGTTTAAATGGGGTTGGATCTTCACATCCCAACTTTGATCTAAACTCTGGCTTCACCATTGATGGCCCCAACAGAGACATGTTGACTGCAAGACAATTTTTCTTTCCTGCTCAAGGCAGGGCTATTGAGGAGCATGTAAGGACCCTTCCTCAATCCTCTAGTTCTGGGGTTAGTGTGAAAAGAAAGGAACCAGACGGTGCCTGGGAAACCTATCCACGTAGCTACAAACATCAGCAACCTCCATGGAAATAG 3150 0.4267 MTLEDFFTLTEMKDGLTAPSRVQELVSVMKKEQDRVVKNAGDATRQWAAVASTIAATENKDCLDLFVQSDGLWFINRWLKDAQNLGADNTNDGFIEESITAMLRAVEKLYLDSEKSISSGISVTVNNLLGHHSSKVQDRARALFEHWKGGGLGDADNSDLDRLNNESDKIVREEGQPSCVNEAGNDNHLPSQLAGDEKSLLGGSNSQLQEKVSSIQIQSIDNALQSSVSLDCEDIKEKSSHVASAQESTLREGETTLAGTCSLPITKQGSFKGQQDDLQLSDLSKKEKQDQDVNGPPEELRASDISSESAKPDPEPASTGDSEAKALESVKEEPALEHNVESNEKVVFPKISVSGSMRTPESDGMSEMDDFRATSSSNPQLPKASETDDDSCSKMLPDLSVTGSNLEKPEMSFIKSEYIIAVKEIKDQESDQDDDTSNGSDSFNQGKGHRSPNINDKSSDMEIEYGNVDALEVARLVAQEVERECVSPVKEGNDHGSNRTTNGSDSFKWRNGPKSPNVIGKSCEIELEYGMVDALEVARQVAQEVEREVSSSSEKISKGGIRQRGSLDSVGRKDEVTRILPEEVSSRQSNSAEVCSEEVGHMTVSDNVEAGPDDLDSSQVTEAAQDPGGNSEKSLCTFDLNEEVVSDDMDVSVNAMSTVPIPVVSASKPAQSSGLPMAPLQFEGTLGWKGSAATSAFRRASPRRNSDGEKNVSIGRNSEISKQRHCCLDFDLNVAEGEEGLVKQIGESSGLPSGQSSVELSPKRTNRFELDLNSIGDDGDAQPSDQRMEGPLFSGRNGYWSPSPASSSSSMQPSVRNIDLNDRPYFQTDLVESSYKRSKLDASVISILGAKVEVGRREYVPQTLSLPNGKAIEPAMDHPLSGAGGILGMGPPLSYNHSNAFGYNGLTSVPALSFSSAMYGPSGGPIPYMVDSRGTPVMPQVGGSSSTVLSSYTQPPFIVSMTRTQFGLNGVGSSHPNFDLNSGFTIDGPNRDMLTARQFFFPAQGRAIEEHVRTLPQSSSSGVSVKRKEPDGAWETYPRSYKHQQPPWK* 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0057 1049 MobiDBLite consensus disorder prediction 173 192 - -
Pvu1g0057 1049 MobiDBLite consensus disorder prediction 493 511 - -
Pvu1g0057 1049 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 491 1049 - -
Pvu1g0057 1049 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 1 486 - -
Pvu1g0057 1049 MobiDBLite consensus disorder prediction 612 633 - -
Pvu1g0057 1049 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 486 - -
Pvu1g0057 1049 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 491 1049 - -
Pvu1g0057 1049 MobiDBLite consensus disorder prediction 606 633 - -
Pvu1g0057 1049 MobiDBLite consensus disorder prediction 486 515 - -
Pvu1g0057 1049 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 149 IPR035441 -
Pvu1g0057 1049 MobiDBLite consensus disorder prediction 773 813 - -
Pvu1g0057 1049 MobiDBLite consensus disorder prediction 425 459 - -
Pvu1g0057 1049 MobiDBLite consensus disorder prediction 799 813 - -
Pvu1g0057 1049 MobiDBLite consensus disorder prediction 546 593 - -
Pvu1g0057 1049 ProSiteProfiles TFIIS N-terminal domain profile. 73 154 IPR017923 -
Pvu1g0057 1049 MobiDBLite consensus disorder prediction 325 344 - -
Pvu1g0057 1049 MobiDBLite consensus disorder prediction 1013 1049 - -
Pvu1g0057 1049 MobiDBLite consensus disorder prediction 437 452 - -
Pvu1g0057 1049 MobiDBLite consensus disorder prediction 284 408 - -
Pvu1g0057 1049 Coils Coil 535 555 - -
Pvu1g0057 1049 MobiDBLite consensus disorder prediction 567 581 - -
Pvu1g0057 1049 Pfam TFIIS helical bundle-like domain 102 148 IPR017923 -
Pvu1g0057 1049 MobiDBLite consensus disorder prediction 369 386 - -
Pvu1g0057 1049 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 150 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0057 Pvu-Chr1 474133 477911 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pvu1g0057 Med26 5.8e-05 No_clan