Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0039 ATGAGTGAAGACGTGGAAATGAAAGATCAGGCAACGCCTTCACACGTGATTTCTTCAGCTCTTCCATCTACATTGCAAGATTTGAAGGAAATATCATCAATCATTGAAACCGGTTCGTACTCAAAGGAAGTCCGTCGAATTGCTCGTGCCGTGCGCCTTACATTTGCATTGAGACGTAAACTTACGGCACCGCTCCTCTCATCCTTTCTTGATTACGTTCTCGTGCCCGCTTCTGAACTTCACACTAAGTTTTCCTCTTATCTTCCTAGTCTCAAGGAGGGTGATCGAGAGATGGAAGTGGACAGTGCAACATCTGCCATTCAAAACCCGGTGGCGAAGCACTTGTTGCCTGAGCTAGAAATCTACTGTTACCTCCTTGTCCTACTTTTTCTAATTGACCAGAAAAGATATGACGCGGCCAAAGCTTGTTCCTCAGCTTGCATTGTTCGGCTGAAGAGCTTGAATAGAAGAACTGTGGATGTTATTGCATCTAGACTGTACTTTTATTACTCGTATAGCTATGAGCTTACAGGAGATCTCGCTGAAATTAGAGGCAACCTCCTTGCATTGCACCGGATTGCTACTCTGCGCCATGATGAGCTGGGTCAGGAAACACTTCTTAATCTGTTACTTCGTAACTACCTACACTACAACCTATATGATCAGGCAGAGAAATTGAGGTCTAAGGCTCCACGTTTTGAGGCCCATTCAAATCAGCAGTTTTGTCGCTATCTCTTCTACCTTGGCAGAATTCGGACAATTCAGCTGGAGTATACCGATGCAAAAGAGTCTCTCCTGCAGGCTGCTCGTAAAGCTCCCAGTGCAGCACGAGGTTTTCGAATTCAATGTAATAAGTGGGCTGTGATAGTGCGGTTATTATTGGGAGAAGTGCCTGAAAGGAATGTCTTTATGCAGAGAGGAATGGAGAAAGCTTTGAGACCTTACTTTGAGCTTACTAATGCTGTTCGGATTGGTGACCTGGACTTGTTTAAGAATGTTGCAGAGAAGTTTGGTACAACTTTCAATAGAGATGGAACTCATAATTTGATTGTTCGGCTGCGCCATAATGTCATTAGGACTGGTTTACGCAACATCAGCATATCATATTCACGCATATCGGTAGCTGATGTAGCTAAAAAGTTGAGGTTGAACTCTGCAAATCCAGTTGCTGATGCTGAGAGCATTGTTGCAAAGGCTATCCGCGATGGGGCTGTTGATGCTTCATTGGATCATGCTGACGGGTGGATGGGATCGAAGGAAACTGGAGATATTTACTCTACAAATGAACCTCAGGTGGCATTTAATTCTCGGATTTCCTTTTGTCTTAACATGCACAATGAGGCTGTTCTAGCACTGCGTTTTCCACCAAACACACACAAGGAAAAGGAAAGTGCCGAGAAGAGGAGAGAAAGACACCAACAGGAGCAAGAATTGGCTAAGCATATCGAAGAGGAAGATGATGATGACTTCTGA 1473 0.4426 MSEDVEMKDQATPSHVISSALPSTLQDLKEISSIIETGSYSKEVRRIARAVRLTFALRRKLTAPLLSSFLDYVLVPASELHTKFSSYLPSLKEGDREMEVDSATSAIQNPVAKHLLPELEIYCYLLVLLFLIDQKRYDAAKACSSACIVRLKSLNRRTVDVIASRLYFYYSYSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGRIRTIQLEYTDAKESLLQAARKAPSAARGFRIQCNKWAVIVRLLLGEVPERNVFMQRGMEKALRPYFELTNAVRIGDLDLFKNVAEKFGTTFNRDGTHNLIVRLRHNVIRTGLRNISISYSRISVADVAKKLRLNSANPVADAESIVAKAIRDGAVDASLDHADGWMGSKETGDIYSTNEPQVAFNSRISFCLNMHNEAVLALRFPPNTHKEKESAEKRRERHQQEQELAKHIEEEDDDDF* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0039 490 SUPERFAMILY "Winged helix" DNA-binding domain 349 420 IPR036390 -
Pvu1g0039 490 Pfam Proteasome regulatory subunit C-terminal 423 489 IPR013586 GO:0000502|GO:0030234|GO:0042176
Pvu1g0039 490 ProSiteProfiles PCI domain profile. 242 423 IPR000717 -
Pvu1g0039 490 Pfam PCI domain 314 416 IPR000717 -
Pvu1g0039 490 MobiDBLite consensus disorder prediction 455 490 - -
Pvu1g0039 490 Gene3D - 248 419 - -
Pvu1g0039 490 Coils Coil 457 485 - -
Pvu1g0039 490 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 490 - -
Pvu1g0039 490 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 1 490 - -
Pvu1g0039 490 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 348 441 - -
Pvu1g0039 490 SMART PINT_4 348 441 IPR000717 -
Pvu1g0039 490 MobiDBLite consensus disorder prediction 456 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0039 Pvu-Chr1 336134 341186 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0039 1 336134 341186 Pvu1g0039 1 336134 341186 ECH
Pvu1g0039 1 336134 341186 Pvu9g0197 9 3540794 3543979 PCT