Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu11g2224 | ATGCATGCAGAACAAAAAATGAACATAAACATGAACATGAACATGGGCTTGGAGCTAAAGAAATGTTTGGCTTCTGGCTTTCGGTGGTTGCAGGAAGTGAAGCAATGCCATTGTCGCCTTCTCCGACTTGGTCTCCACCACGACACCTTCCTCATCAACACCCTCTTGCGCTCTTCCCTCAACCTCCGCGCCACGCAATACGCCACCGTCGTTTTCGCCCAAACCCCCAACCCCAACATCTTTCTCTACAACACCCTCATCCGCGGCCTCGTCTCCAACGAAGCCTTCCACGAAGCCGTTTCGCTCTACGCTTCTATGCGCCAGCGCAGCGCCTTTGCCCCCGACAACTTCACCTTCCCCTTCGTCCTCAAAGCCTGCGCCAGGCTCAGGAACACCCACGTGGGTCTCACCATTCACTCTCTCGTGATCAGAACCGGGTTCGAAAAGGATGTGTTTGTTAACACCGGCCTCGTTTGTTTCTACTCCAAAAACGGGTTTTTGAGTCATGCGCGCCGGGTGTTTGATGAAATTCCTGAGAAGAATGTTGTGTCTTGGACTGCCATCATTTGTGGGTATGTTGAGTTTGGTTATTGTGAGGAGGCTGTTGGGTTATTTAGAGGGTTGCTGGAGATGGGTGTGAAGCCGGATAGTTTCACGTTGGTTCGGGTTTTGTATGCTTGTTCGAGGACGGGGGACTTGGCTAGTGGACGGTGGATTGATGGGTATATGAGGGAGACTGGATTGTGTGGGAATGTGTTTGTGGCAACCTCGTTGGTTGATATGTACACCAAGTGCGGGAGCATGGAGGAAGCACGGAGAGTGTTTGATGGGATGGTGGAGAGGGATGTTGTCTGTTGGAGTGCCTTGATTCAGGGGTATGCTGCCAATGGGATGCCGAAGAAAGCACTTGAGGTGTTTTTTGAGATGCAGAGGGAGAATGTGAGGCCAGATTGTTATGCCATGGTGGGGTTTCTTTCTGGATGTGCGAGGTTGGGGGCGTTGGAGTTGGGGAATTGGGCTAGGGGTTTGGTGGATGGCGATGAGTTCTTGTGTAATCCTGTGTTGGGTACCGCATTGATTGACTTTTATGCGAAATGTGGCAATGTGGCGCGGGCTGTGGAGGTTTTTAACAGCATGAGGAGAAAGGATTGTGTGGTATTCAATGCTGTTATTTCTGGGCTGGCTATGTGTGGACATGTTGGGGCTGCCTTTGGGGTGTTTAGCCAAATGGGAAAGGTGGGAATGCAGCCTGATGGGAACACTTTTGTTGGTTTGCTTTGTGGGTGTACTCATGCTGGTTTGGTTGATGATGGTCGGCGTTATTTTAATCGCATGAGTTGTGTTTTTGATGTGACTCCTACTATAGAGCATTATGGATGCATGGTGGATCTTTTGGCTCGTGCAGGTTTGTTGGTTGAGGCACGGGATTTGATCAAGAGTATGCCGATGAAGGCGAATGCTATTGTTTGGGGAGCACTGTTGGGAGGATGTAGGTTACATAAGGATACCCAATTGGCTGAACACGTGTTGATGCAGCTCATTGAGTTAGAACCGTGGAATTCAGGACATTATGTTCTCTTATCGAATATATATTCAGCAAGCCGTCGATGGGATGAAGCAGAAAAGATCAGATCAAGTTTGAGTCAGAAAGGGATGCAGAAATTACCTGGGTGTAGTTGGGTTGAAGTTGATGGGGTTGTTCATGAATTCCGAGTAGGGGACACTTCCCATCCTTTAACACACAAGATATATGAAAAACTTGAAAGTTTATTTAAGGACTTGAGAGAAGCTGGCTATAGTCCGACCACTGAGTTTGTGCTTTTTGATGTAGAAGAGGAGGAGAAGGAGTACTTCCTTGGCTGTCATAGTGAGAAGTTAGCTGTTGCATTTGCACTGATCAGTACCAGTGCCAAAGATGTGATTCGTGTTGTTAAAAACCTTCGTGTATGTGGTGATTGTCATGAAGCTATAAAACTTATTTCAAAAGTTACACACAGAGAGATCATTATTAGAGATAATAACAGATTCCATCATTTAAGTGAAGGCTCATGCTCTTGTCGGGATTATTGGTAA | 2073 | 0.4737 | MHAEQKMNINMNMNMGLELKKCLASGFRWLQEVKQCHCRLLRLGLHHDTFLINTLLRSSLNLRATQYATVVFAQTPNPNIFLYNTLIRGLVSNEAFHEAVSLYASMRQRSAFAPDNFTFPFVLKACARLRNTHVGLTIHSLVIRTGFEKDVFVNTGLVCFYSKNGFLSHARRVFDEIPEKNVVSWTAIICGYVEFGYCEEAVGLFRGLLEMGVKPDSFTLVRVLYACSRTGDLASGRWIDGYMRETGLCGNVFVATSLVDMYTKCGSMEEARRVFDGMVERDVVCWSALIQGYAANGMPKKALEVFFEMQRENVRPDCYAMVGFLSGCARLGALELGNWARGLVDGDEFLCNPVLGTALIDFYAKCGNVARAVEVFNSMRRKDCVVFNAVISGLAMCGHVGAAFGVFSQMGKVGMQPDGNTFVGLLCGCTHAGLVDDGRRYFNRMSCVFDVTPTIEHYGCMVDLLARAGLLVEARDLIKSMPMKANAIVWGALLGGCRLHKDTQLAEHVLMQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSSLSQKGMQKLPGCSWVEVDGVVHEFRVGDTSHPLTHKIYEKLESLFKDLREAGYSPTTEFVLFDVEEEEKEYFLGCHSEKLAVAFALISTSAKDVIRVVKNLRVCGDCHEAIKLISKVTHREIIIRDNNRFHHLSEGSCSCRDYW* | 691 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu11g2224 | 690 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED | 14 | 683 | - | - | |
| Pvu11g2224 | 690 | Pfam | E+ motif | 567 | 592 | IPR046849 | - | |
| Pvu11g2224 | 690 | Pfam | PPR repeat family | 78 | 128 | IPR002885 | - | |
| Pvu11g2224 | 690 | Pfam | PPR repeat family | 382 | 429 | IPR002885 | - | |
| Pvu11g2224 | 690 | Pfam | PPR repeat family | 281 | 330 | IPR002885 | - | |
| Pvu11g2224 | 690 | Pfam | PPR repeat family | 180 | 227 | IPR002885 | - | |
| Pvu11g2224 | 690 | Pfam | E motif | 500 | 562 | IPR046848 | - | |
| Pvu11g2224 | 690 | Gene3D | Tetratricopeptide repeat domain | 135 | 233 | IPR011990 | GO:0005515 | |
| Pvu11g2224 | 690 | Gene3D | Tetratricopeptide repeat domain | 234 | 336 | IPR011990 | GO:0005515 | |
| Pvu11g2224 | 690 | Gene3D | Tetratricopeptide repeat domain | 2 | 134 | IPR011990 | GO:0005515 | |
| Pvu11g2224 | 690 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 251 | 281 | IPR002885 | - | |
| Pvu11g2224 | 690 | TIGRFAM | PPR: pentatricopeptide repeat domain | 385 | 418 | IPR002885 | - | |
| Pvu11g2224 | 690 | TIGRFAM | PPR: pentatricopeptide repeat domain | 183 | 217 | IPR002885 | - | |
| Pvu11g2224 | 690 | TIGRFAM | PPR: pentatricopeptide repeat domain | 357 | 385 | IPR002885 | - | |
| Pvu11g2224 | 690 | TIGRFAM | PPR: pentatricopeptide repeat domain | 256 | 285 | IPR002885 | - | |
| Pvu11g2224 | 690 | TIGRFAM | PPR: pentatricopeptide repeat domain | 284 | 318 | IPR002885 | - | |
| Pvu11g2224 | 690 | TIGRFAM | PPR: pentatricopeptide repeat domain | 82 | 109 | IPR002885 | - | |
| Pvu11g2224 | 690 | Gene3D | Tetratricopeptide repeat domain | 355 | 578 | IPR011990 | GO:0005515 | |
| Pvu11g2224 | 690 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 352 | 382 | IPR002885 | - | |
| Pvu11g2224 | 690 | Pfam | DYW family of nucleic acid deaminases | 598 | 690 | IPR032867 | GO:0008270 | |
| Pvu11g2224 | 690 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 282 | 316 | IPR002885 | - | |
| Pvu11g2224 | 690 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 181 | 215 | IPR002885 | - | |
| Pvu11g2224 | 690 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 14 | 683 | - | - | |
| Pvu11g2224 | 690 | Pfam | PPR repeat | 457 | 482 | IPR002885 | - | |
| Pvu11g2224 | 690 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 383 | 417 | IPR002885 | - | |
| Pvu11g2224 | 690 | SUPERFAMILY | TPR-like | 261 | 542 | IPR011990 | GO:0005515 | |
| Pvu11g2224 | 690 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 79 | 113 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu11g2224 | Pvu-Chr11 | 49915112 | 49918322 | Dispersed/Transposed |