Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2220 ATGAGCATGGTGTATACTCATGGAGTGAAGTATTCCCAAGGAGTGGCAAAGATGAACTCAGAGATGGATTCAAATATTGGTCAACAACATTGTCACCAACAAAATTCTGGGCTAATGAGGTACCGTTCTGCTCCAAGCTCATTGCTCACAAGCCTTGTGAACAGCAGCAGCAACATCAACATCAACAACAACATTGGATGTGTCAATGGTGAGACTCAGCAGCAACAGAATTATCCTCCCTCCACAAATTCTGAAATGGAGACCATGTTTGCCAAGTTGATTTCTTCCAATGATTCTGAGCCTTTGCAAGAGTTTGAAGGGAAGGCAGTGAAGGAAGAAGCAGGGGACACTGTTTCACAGCCACCACAACAGCACAATGGTTACTCTTTCGGGTCATCACCTCAGATAATGTACCAAACTCAGCAAGTTCAAGGCTTTCCCATGGCAAATGGTTCTTTAAGGTCTGCAGGGAATGGTTTTGATGGCTCATTCAGTGCAGTGAATTCCATGGCTTCTCAGAATTCCACACAAACCAAAATGGGTGCTTCCACCAATTGCTCCAATCTCATTAGGCAAAAGAGTTCACCTGCAGGGTTTTTCTCCAATTACTCAGTTGATAATGCACTGAGAGATATGGCTAGTTTTAGGGGCTGTGATGTATCAAATGGACAAGCTATTACATCCACCAGTGGGTTAAATGGTACTTTGAACTTCTCATCAAGGTCATCCTCTTGCTCCACCAGAATGCCACAGATTGCTGAAAATGGAAATGAAGGTGTGGAACCAAATTGTGTTGAAAGTAGAAACCTGAGGAATGACAATGACAACACCAAGTGTTACATGCCAAGTTTCACCACTGACTTCTGGGATGGTTCTGTAATCAGTGCCCCCAGAACAGCTAGCAACAATTGTGAAATATCATTTTCCACTTCAAATGCAATGGATATTCAGGATGCAGATTTTGGATATCAAAAAGTTGGTCTGACCCATCATTTGAGTCTGCCTAGCTCTTCTAGTAGAATGGCTACCATGGAGAAGTTATATCAAAATCAAGGAGTTGTTCCATGCAAAATTCGTGCCAAGAGAGGTTTTGCCACTCACCCAAGAAGCATTGCTGAAAGGGAAAGAAGAACAAGAATTAGTGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATCAGACAAGCAAACAAGCACATCTGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACCTGCAGAAACAAGTCAAGATGCTGGCTGACACTAAGGAAAAGTGCACTTGTACAAGTAATCACAAGCAATATTCTAGACCTTGTGCCTGA 1329 0.4229 MSMVYTHGVKYSQGVAKMNSEMDSNIGQQHCHQQNSGLMRYRSAPSSLLTSLVNSSSNININNNIGCVNGETQQQQNYPPSTNSEMETMFAKLISSNDSEPLQEFEGKAVKEEAGDTVSQPPQQHNGYSFGSSPQIMYQTQQVQGFPMANGSLRSAGNGFDGSFSAVNSMASQNSTQTKMGASTNCSNLIRQKSSPAGFFSNYSVDNALRDMASFRGCDVSNGQAITSTSGLNGTLNFSSRSSSCSTRMPQIAENGNEGVEPNCVESRNLRNDNDNTKCYMPSFTTDFWDGSVISAPRTASNNCEISFSTSNAMDIQDADFGYQKVGLTHHLSLPSSSSRMATMEKLYQNQGVVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKQTSTSDMLDLAVEYIKDLQKQVKMLADTKEKCTCTSNHKQYSRPCA* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2220 442 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 27 434 - -
Pvu11g2220 442 CDD bHLH_AtbHLH_like 369 421 IPR045239 -
Pvu11g2220 442 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 27 434 - -
Pvu11g2220 442 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 367 429 IPR036638 GO:0046983
Pvu11g2220 442 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 364 414 IPR011598 GO:0046983
Pvu11g2220 442 Gene3D - 366 437 IPR036638 GO:0046983
Pvu11g2220 442 SMART finulus 370 420 IPR011598 GO:0046983
Pvu11g2220 442 Pfam Helix-loop-helix DNA-binding domain 370 415 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2220 Pvu-Chr11 49797429 49801552 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu11g2220 HLH 3.6e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0383 5 3552495 3555501 Pvu11g2220 11 49797429 49801552 ECH
Pvu11g2220 11 49797429 49801552 Pvu11g2220 11 49797429 49801552 ECH