Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu11g2214 | ATGACAGATCCTAAGTCCAATTTGTTCCATGAATGGTTCAACTTCATGCTCCTCCACCCTCACTACCCTTCTTCTTCCTCCTCTTCTCAATCCTACCCTCTTCCCAATTACTCAAACAACAGATTTGGAATTCAATTACAAGGAGAATCATCTTCATCTTCATCTTCATATTCATATTCATATTCATATCCTCCTCCTCCTTCATCTCCTCCTCTCAGAGAGGCCCTTCCTCTCATCAACAAGATAAGCCTCACAGGTGAAAATGATGAAGCCTCACCATGTGTTGTGGAAGAGAAAGAAGAGGAGAAGAAGCATGAGAGTGGTGAAGATGGTGATCAAGAAACTGTGACTGTTGCCCTACACATAGGGCTTCCAAGAATGGATACTTCTTCTGATCTGGGGTCATCTAGGGTGTCCTCAACTTGTAGGGAAATGGGTGAGAAAGAGGAAGTGAACATAGTTTCTGAACACCCTTTGGAAAGATTGAACAAGGGTCAGTATTGGATTCCCACCCCTTCACAGATTCTCATTGGTCCTACACAGTTCCCATGTCCTGTGTGCTCAAAAACCTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTGAAAGGAACACAACCAACAGCCATGTTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTGAAGGATTTCAGAACTCTTCAAACACATTACAAGAGAAAGCACGGCATAAAACCCTACATGTGCAGAAAGTGTGGCAAAGCATTTGCAGTGAAAGGTGATTGGAGAACACATGAGAAGAACTGTGGCAAAATATGGTATTGTTTATGTGGCTCTGATTTCAAACACAAAAGGTCCCTAAAAGACCATGTCAAGGCCTTTGGCTATGGCCATGGTGCTTTTGGCATTGATTGCTTGCAAGAAGAAGATGAAGCAGCTTCTGAAATTGAACATGATGGAGAAAATTCAACATGA | 1032 | 0.4302 | MTDPKSNLFHEWFNFMLLHPHYPSSSSSSQSYPLPNYSNNRFGIQLQGESSSSSSSYSYSYSYPPPPSSPPLREALPLINKISLTGENDEASPCVVEEKEEEKKHESGEDGDQETVTVALHIGLPRMDTSSDLGSSRVSSTCREMGEKEEVNIVSEHPLERLNKGQYWIPTPSQILIGPTQFPCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHVKAFGYGHGAFGIDCLQEEDEAASEIEHDGENST* | 344 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu11g2214 | 343 | Gene3D | Classic Zinc Finger | 181 | 204 | - | - | |
| Pvu11g2214 | 343 | PANTHER | ZINC FINGER PROTEIN WIP2 | 1 | 338 | IPR043584 | GO:0003700|GO:0010468 | |
| Pvu11g2214 | 343 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 182 | 209 | IPR013087 | - | |
| Pvu11g2214 | 343 | MobiDBLite | consensus disorder prediction | 43 | 74 | - | - | |
| Pvu11g2214 | 343 | Gene3D | Classic Zinc Finger | 244 | 315 | - | - | |
| Pvu11g2214 | 343 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 266 | 286 | IPR013087 | - | |
| Pvu11g2214 | 343 | SUPERFAMILY | beta-beta-alpha zinc fingers | 178 | 204 | IPR036236 | - | |
| Pvu11g2214 | 343 | SMART | c2h2final6 | 182 | 204 | IPR013087 | - | |
| Pvu11g2214 | 343 | SMART | c2h2final6 | 266 | 286 | IPR013087 | - | |
| Pvu11g2214 | 343 | PANTHER | ZINC FINGER PROTEIN WIP2-LIKE | 1 | 338 | - | - | |
| Pvu11g2214 | 343 | Pfam | C2H2-type zinc finger | 182 | 201 | - | - | |
| Pvu11g2214 | 343 | MobiDBLite | consensus disorder prediction | 43 | 62 | - | - | |
| Pvu11g2214 | 343 | MobiDBLite | consensus disorder prediction | 92 | 112 | - | - | |
| Pvu11g2214 | 343 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 184 | 204 | IPR013087 | - | |
| Pvu11g2214 | 343 | MobiDBLite | consensus disorder prediction | 87 | 114 | - | - | |
| Pvu11g2214 | 343 | SUPERFAMILY | beta-beta-alpha zinc fingers | 250 | 286 | IPR036236 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu11g2214 | Pvu-Chr11 | 49735662 | 49738596 | Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Pvu11g2214 | zf-C2H2_6 | 2.7e-05 | CL0361 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pvu5g0214 | 5 | 1755567 | 1757797 | Pvu11g2214 | 11 | 49735662 | 49738596 | ECH | |
| Pvu11g2214 | 11 | 49735662 | 49738596 | Pvu11g2214 | 11 | 49735662 | 49738596 | ECH | |
| Pvu11g2214 | 11 | 49735662 | 49738596 | Pvu5g0214 | 5 | 1755567 | 1757797 | PCT |