Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2209 ATGACGGACGGTCATCAATTCAACAATATCACTCTCGGAGGCCGTGGAGGCACTAATCCAGGACAGATAAAAATACACTCTGGAGGAATAGTATGGAAGAGACAGGGCGGTGGTAAATTAATTGAAGTTGATACATCCGATATAGAGGGGGTGACATGGATGAAGGTTCCAAAGACTAACCAACTTGGTGTTCAAATTAAAGATGGATTGTACTACAAGTTCACTGGTTTTCGTGAGCAGGATGTTGTAAGTTTGACCAACTTTTTCCAAAACACTTGTGGAATAACAGTACGGGAGAAGCAACTCTCTGTTAGCGGACGTAATTGGGGAGAAGTTGATCTAAATGGAAATATGTTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTGTCGCTTGCAGATGTCTCCCAAACACAGCTTCAAGGGAAGAATGATGTGATCTTGGAGTTTCACGTGGATGACACAACTGGAGCTAATGAGAAAGATTCACTGATGGAGATAAGTTTCCATATACCAAGTTCCAACACCCAGTTTGTTGGCGATGAAAAAACTCCTCCTGCTGAGGTTTTCCGCAGCAGAATAATGTCTATGGCTGATGTTGGTGCTGGAGGTGAAGATGCTGTTGTTACATTTGAGAGTATTGCGATCCTTACACCAAGAGGACGATACATTGTTGAGTTACACATGTCATTCTTGCGACTTCAGGGACAGGCTAATGATTTCAAAATCCAATACAGCAGTGTAGTTCGCCTATTTTTACTTCCTAAGTCTAATCAACCACATACCTTCGTCATTATTAGTCTTGATCCCCCTATTCGGAAGGGACAAACTTTGTACCCTCATATTGTGATGCAGTTTGAATCTGATTATGTTGTCCAAAGTGAATTGACAATGAATGAAGATCTTTATAACACAAAGTACAAGGACAAGTTAGAGCTGTCTTATAAGGGACTTATTCATGAAGTGTTCACTACAATATTACGTGGCTTGTCTGGTGCCAAAGTCACTAAGCCTGGAAAATTTAGGAGTTGTCAGGATGGCTATGCTGTGAAATCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTACCTAAGCCTCCTACTCTTATTCTTCATGAAGAGATTGACTATGTGGAATTCGAGAGGCATGCTGCTGGTGGTTCCAATATGCATTATTTTGACCTTCTTATCAGACTAAAATCTGAACAAGAGCATCTCTTCCGTAATATTCAGAGAAATGAGTACCACAATTTGTATGAATTTATTAGTTCAAAGGGCTTGAAAATTATGAACTTAGGAGATGGTCAACCTACTGCTGGTATAAAGAAGGTTCTCGAGAATGACGATGACGATGCTGTTGATCCACATCTTGAGCGCATAAAAAATGCAGCTGGTGACGATGAAAGTGATGAGGAGGATTCAGATTTTGTTGCTGACAAGGATGATGAAGGTTCTCCTACTGATGATTCTGGGGCAGACGATTCTGATGCCAGTAAAAGTGGCGATGAGAAAGAGAAGCCTGCCAAGAAGGAAATAAAGAAGGACCTGCCTCCTAAGGCATCTACTTCTAAAAAGAAATCAAAAGATGATGAAGATGGAAAAAAGAAAAAACAGAAGAAGAAGAAAGACCCAAATGCACCCAAGAGGGCAATGTCTGGTTTTATGTTCTTTTCTAAATTGGAAAGAGAGAATCTCAAGAAAACTAACCCTGGAATCTCATTTACGGATGTGGGAAGAGTACTTGGAGAGAAATGGAAAAAAATGTCAGTGGAAGAGAAGGAACCATACGAGGCAAAAGCACGTGAAGATAAAAAACGTTACAAGGATGAGATTAGTGACTACAAGAATCCCCAACCCATGAATGTTGATTCAGCAAATGTATCTGACGGTACCTGA 1923 0.4056 MTDGHQFNNITLGGRGGTNPGQIKIHSGGIVWKRQGGGKLIEVDTSDIEGVTWMKVPKTNQLGVQIKDGLYYKFTGFREQDVVSLTNFFQNTCGITVREKQLSVSGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPSSNTQFVGDEKTPPAEVFRSRIMSMADVGAGGEDAVVTFESIAILTPRGRYIVELHMSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFESDYVVQSELTMNEDLYNTKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYEFISSKGLKIMNLGDGQPTAGIKKVLENDDDDAVDPHLERIKNAAGDDESDEEDSDFVADKDDEGSPTDDSGADDSDASKSGDEKEKPAKKEIKKDLPPKASTSKKKSKDDEDGKKKKQKKKKDPNAPKRAMSGFMFFSKLERENLKKTNPGISFTDVGRVLGEKWKKMSVEEKEPYEAKAREDKKRYKDEISDYKNPQPMNVDSANVSDGT* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2209 640 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 1 638 - -
Pvu11g2209 640 MobiDBLite consensus disorder prediction 595 640 - -
Pvu11g2209 640 CDD HMGB-UBF_HMG-box 556 621 - -
Pvu11g2209 640 Pfam Histone chaperone Rttp106-like 350 439 IPR013719 -
Pvu11g2209 640 Gene3D - 339 447 IPR011993 -
Pvu11g2209 640 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Pvu11g2209 640 SMART hmgende2 555 625 IPR009071 -
Pvu11g2209 640 SUPERFAMILY PH domain-like 206 440 - -
Pvu11g2209 640 CDD PH2_SSRP1-like 342 441 - -
Pvu11g2209 640 Gene3D - 199 338 - -
Pvu11g2209 640 CDD PH1_SSRP1-like 207 340 - -
Pvu11g2209 640 Gene3D - 1 92 IPR011993 -
Pvu11g2209 640 Gene3D - 95 179 IPR038167 -
Pvu11g2209 640 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 556 624 IPR009071 -
Pvu11g2209 640 SMART Rtt106_2 348 441 IPR013719 -
Pvu11g2209 640 Pfam HMG (high mobility group) box 556 624 IPR009071 -
Pvu11g2209 640 MobiDBLite consensus disorder prediction 469 564 - -
Pvu11g2209 640 Pfam POB3-like N-terminal PH domain 6 97 IPR035417 -
Pvu11g2209 640 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Pvu11g2209 640 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Pvu11g2209 640 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Pvu11g2209 640 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Pvu11g2209 640 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Pvu11g2209 640 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Pvu11g2209 640 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Pvu11g2209 640 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
Pvu11g2209 640 MobiDBLite consensus disorder prediction 501 547 - -
Pvu11g2209 640 SUPERFAMILY HMG-box 543 625 IPR036910 -
Pvu11g2209 640 MobiDBLite consensus disorder prediction 626 640 - -
Pvu11g2209 640 MobiDBLite consensus disorder prediction 595 622 - -
Pvu11g2209 640 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 638 - -
Pvu11g2209 640 Gene3D High mobility group box domain 539 635 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2209 Pvu-Chr11 49716318 49723076 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pvu11g2209 POB3_N 1.3e-22 CL0266