Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2205 ATGAGGAAACCTGATCTGATGGCCAACAAGGACAAAAAGAGTGACATTAAGAGCAAGTTGAGAAAAGGGTTGTGGTCACCTGATGAAGATGAGAAGCTCTTAAGGTACATGCTCACAAATGGACAAGGGTGTTGGAGTGACATTGCAAGGAATGCTGGTCTCCAAAGGTGTGGCAAAAGTTGCCGTCTTCGTTGGATTAACTACTTGAGACCTGACCTCAAGCGTGGTGCATTCTCACCCCAAGAGCAAGACCTCATCTTTCACTTGCATTCTATTCTTGGTAACAGGTGGTCTCAGATTGCAGCACGTCTACCTGGTCGCACAGACAATGAAATAAAGAATTTCTGGAACTCTACACTGAAGAAAAGGATGAAAACTAACACTTCTACTGGCTCACTGAATAACAGCACTGACTCATCAGAGTCTAAAGATGTTGTGAGTGGGATCATGCCCTTGAATGAACATGACATCATGAACATGTGCATGGATTCCTCTTCATGCATATCATCCATGCAAGGAATGGTTTTGCCTGACCAATTTGACCCTTTTGCCATGTTGGTAAATAATCAGTGTGACATGACTAATAATGTTTCAGAAGATTTTCTCAACATCTCATGCATGACACAAATTGGCATGGTAGAAGGGCACCAAGGGAATTATGGGACATTGGAGCCAAATAACAAAATGGGGTTAGGAAGAGACTTCTCCCTTCCTTCACTAGAAAGTAGAAGCATTGAAATTGATGTGAAAAGCCATAACAACAACCACTTCAATTATGGTTGCTTCAACAACACTGATAAGATCAAAGGCTCCAAGGTAGAGGACTTAATTGGGTTTGGAAATCATGGCCAAGGGGAATTTTATTTGGAGAATTTGATGCAAGACATAACCTCTTTCCCTTTACTTGAATTTTAA 915 0.4142 MRKPDLMANKDKKSDIKSKLRKGLWSPDEDEKLLRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEQDLIFHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRMKTNTSTGSLNNSTDSSESKDVVSGIMPLNEHDIMNMCMDSSSCISSMQGMVLPDQFDPFAMLVNNQCDMTNNVSEDFLNISCMTQIGMVEGHQGNYGTLEPNNKMGLGRDFSLPSLESRSIEIDVKSHNNNHFNYGCFNNTDKIKGSKVEDLIGFGNHGQGEFYLENLMQDITSFPLLEF* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2205 304 CDD SANT 77 120 IPR001005 -
Pvu11g2205 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Pvu11g2205 304 Gene3D - 19 75 - -
Pvu11g2205 304 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Pvu11g2205 304 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Pvu11g2205 304 CDD SANT 25 69 IPR001005 -
Pvu11g2205 304 PANTHER MYB DOMAIN PROTEIN 55 1 304 - -
Pvu11g2205 304 SMART sant 74 122 IPR001005 -
Pvu11g2205 304 SMART sant 21 71 IPR001005 -
Pvu11g2205 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Pvu11g2205 304 Gene3D - 76 147 - -
Pvu11g2205 304 Pfam Myb-like DNA-binding domain 25 83 - -
Pvu11g2205 304 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Pvu11g2205 304 MobiDBLite consensus disorder prediction 126 145 - -
Pvu11g2205 304 PANTHER TRANSCRIPTION FACTOR MYB83 1 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2205 Pvu-Chr11 49615520 49618217 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu11g2205 Myb_DNA-bind_6 7e-13 CL0123