Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2204 ATGGAAGACAATGGCAGTTCCAATGAACCCAACAACAACTTCAAGTGGCCTCTCTTCATTTTCTTCAAAGATGCAAGGCATGTTTTGAAGCTGGATGCAGTTTCAAGAGAGTTATTAGGGATTGCTTTCCCTTCAGCACTAGCTGTTGCAGCTGATCCAATTGCTTCTCTAATTGACACAGCTTTCATAGGCCACTTAGGGCCAGTGGAACTTGCAGCTGCTGGAGTTTCCATTGCTTTGTTCAACCAAGCTTCAAGAATCACCATTTTCCCTCTGGTGAGCATCACCACTTCATTTGTGGCTGAGGAAGATACTCTTGAAAAGCTCAATAACAAATCCAAGTTCAAAGAAGTGGTTGTGCCAGAGGATCATATGCTTCAAGACTTACAAAAAGAAAAACCTATGGTTGAAAAATGTGAATCAAAGGATCTTCAAGCTTTGGAAAATTATAATGCTACAAGGGACAATGACCCAGAAATTGGAGATAAAGGCAATAAAAAAATATGCAAGTGTTCAAAGAGTATGGAGAAAGATGAAAAGAAGAAGAGACGTATTGCTTCAGCATCAACAGCTCTACTTTTTGGCACCATTCTTGGCCTCATTCAAGCTTCTGTTCTTATTTTTGCAGCAAAACCTCTCTTACGTGTTATGGGTGTCAAACCAGATTCCCCAATGCTAAATCAAGCAGAAAAGTACTTAAAATTGAGATCCATTGGGGCACCTGCAGTGCTTCTCTCCTTGGCCATGCAAGGAATCTTTAGAGGGTTTAAGGATACAAAAACTCCATTATATGTCATTGTTTCAGGATACACACTTAATGTGATCTTGGATCCAATTCTTATTTTCACATTGAAACTGGGCCTCAAAGGTGCAGCCATTTCACATGTTCTTTCCCAGTACATGATGGCAATCACTCTCTTATTGATACTAATGAAAAAAGTTCATCTCCTACCTCCAAGCATAAAGGATTTGCAGATTTTCAGATTTCTTAAAAATGGAGGTTTGTTGATGATAAGGGTAATAGCAGTGACATTTTGTGTGACCTTGGCAGCATCATTGGCAGCAAGGTTAGGTTCAGTTCCCATGGCTGCATTTCAAACATGCCTACAAGTCTGGTTAACATCATCTCTTCTTGCAGATGGTTTAGCTGTTGCTGTTCAGGCAATTCTAGCTTGTTCTTTTGCTGAAAAAGACCATAAGAAAGCAACAACTGCTGCAACAAAAACACTGCAAATGAGTTTTGTTTTAGGAATGGGACTCTCTCTTGCTGTTGGACTAGGATTATACTTTGGAGCTGGAATATTCTCCAAAAATGTTCATGTTCTGCACTTCATTAAAATAAGCATTCCGTTTGTGGCTGCTACTCAACCAATTAATTCATTAGCCTTTGTATTTGATGGAGTGAACTATGGAGCTTCTGATTTTGCATATTCAGCATACTCTCTGGTGGTGGTGTCCCTAGTAAGTGTAGCCATAGAGTTTGTTCTCTACAGGGCCAAACATTTCATTGGGATTTGGATTGCTCTAACCATATATATGACTCTTCGCATGTTGGCTGGTGTGTGGAGGATGGGAACTGGGACAGGACCTTGGCACTATCTCAGAGGTTGCTCATTGTCTTAG 1623 0.403 MEDNGSSNEPNNNFKWPLFIFFKDARHVLKLDAVSRELLGIAFPSALAVAADPIASLIDTAFIGHLGPVELAAAGVSIALFNQASRITIFPLVSITTSFVAEEDTLEKLNNKSKFKEVVVPEDHMLQDLQKEKPMVEKCESKDLQALENYNATRDNDPEIGDKGNKKICKCSKSMEKDEKKKRRIASASTALLFGTILGLIQASVLIFAAKPLLRVMGVKPDSPMLNQAEKYLKLRSIGAPAVLLSLAMQGIFRGFKDTKTPLYVIVSGYTLNVILDPILIFTLKLGLKGAAISHVLSQYMMAITLLLILMKKVHLLPPSIKDLQIFRFLKNGGLLMIRVIAVTFCVTLAASLAARLGSVPMAAFQTCLQVWLTSSLLADGLAVAVQAILACSFAEKDHKKATTAATKTLQMSFVLGMGLSLAVGLGLYFGAGIFSKNVHVLHFIKISIPFVAATQPINSLAFVFDGVNYGASDFAYSAYSLVVVSLVSVAIEFVLYRAKHFIGIWIALTIYMTLRMLAGVWRMGTGTGPWHYLRGCSLS* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2204 540 Pfam MatE 187 279 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pvu11g2204 540 Pfam MatE 337 494 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pvu11g2204 540 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 9 538 IPR044644 -
Pvu11g2204 540 TIGRFAM matE: MATE efflux family protein 44 506 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pvu11g2204 540 CDD MATE_DinF_like 36 526 IPR044644 -
Pvu11g2204 540 PANTHER PROTEIN DETOXIFICATION 9 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2204 Pvu-Chr11 49589348 49599784 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1521 5 37505124 37509928 Pvu11g2204 11 49589348 49599784 ECH
Pvu11g2204 11 49589348 49599784 Pvu11g2204 11 49589348 49599784 ECH