Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2202 ATGAAAACGCTAACAGTTAACACCGAAGATTCTTTTTCCAGCTTGCTAGAGCTTGCCTCTAACAATGATATTGAAGCTTTCAAGGTTCTTTTAGAGAAGGATCCTGCTGCAATCAACGAGGTTGGGTTCTGGTATGGGCGTCAAAACGGATCGAAGCAAATTGTTCTTGAGCATCGAACCCCTTTGATGGTTGCTGCTACCTACGGCAGCAATGATGTTCTCAAGCTTATTCTGATGTGCCCTGAGGCGGACGTGAATTTTGCTTGTGGTGCGAATAAAACCACCGCCCTTCACTGTGCTGCTTCTGGTGGATCTGCCAATGCTGTTGAAACTGTGAAGCTGCTTTTATCCGCAGGTGCTGATGCGAGTTGCATGGATGCCTTTGGTAATCGCCCTGTAGATGTGACTGTGGTTCCTCCTAAGCTGCAAGAAATGAAACCTGTACTCGAGGATCTTCTATCGGATAGTGCTTCCGATGGGTTTATTGGTGGGTCAATTGGTGAATTCTCTGTTCCTGTGTCTGTTAATTCATCCAGCCCTGGTTCCCCGAATGGGTTGCCATACTCTCCGTTGGAGTCGCCACCATCTCCAGTGGTGGCAAAGTTTACTGAAGCAGCTATTGGCTCTTTTTCAGAGAAGAAGGAGTACCCCATTGATCCATCTCTGCCTGATATAAAGAACAGCATATACGCCACCGACGAGTTTCGGATGTTTTCCTTCAAGGTGAGGCCTTGTTCCCGTGCCTACTCCCATGATTGGACGGAGTGCCCATTTGTTCACCCTGGAGAAAATGCAAGGAGGAGAGACCCTAGGAAGTTCCATTACAGCTGTGTGCCGTGCCCTGATTTTAGGAAAGGGGCTTGCAGGCGTGGAGACATGTGTGAATATGCTCATGGGGTGTTTGAATGTTGGCTTCACCCAGCTCAGTATCGGACACGCCTTTGCAAAGATGGTACCAGTTGTAATCGAAGGGTGTGTTTTTTTGCTCACACTGCAGAGGAGCTGCGTCCACTCTACGCCTCCACTGGATCTGCCGTTCCTTCGCCACGATCATCGGCCTCCGGTCCTAATGTCATGGACATGGCTGCTGCGATGAGCCTTTTGCCGGGCTCGCCGTCGTCGGTCTCTTCCATGTCGCCATCCCACTTTGGGCAACCCATGTCCCCATCTGCAAATGGCATGTCACTTTCCTCTGGTGCTTGGGCACAGCCAAACGTGCCAGCTCTTCATTTACCAGGAAGCAATCTTCAATCCAGCCGATTGAGATCTTCCCTTAGTGCACGAGACATTCCACCCGAAGACTTCAATGGGATGCTTGATCTTGATGGTCACCAGCACCAGCACCCTTTGAATGACTTGAGCTGTTACTTACAGCCTCGCCCCGGTTCTGGTTGTGTGAGTCGTTCCGGCAGGTCCAAGACCCTAACTCCGGCAAATCTGGAAGACCTCTTTTCTGCTGAGATTTCATCTTCTCCCCGGTATTCGGATCCAGCAGCGGCGTCTGTGTTTTTCCCAACCCACAAATCAGCTGTTCTCAACCAGTTTCAACAGATACAGAGCATGTTATCACCGATTAATACTAATTTGCTTTCTCCCAAGAGTGTTGACCACCCTCTTTTACAGGCCTCCTTTGGTGTCTCTCCTTCTGGAAGGATGTCACCAAGAAGTTTGGAACCAATCTCTCCGATGAGCACACGCCTATCGGCGTTTGCTCAGCGCGAGAGACAGCAGCAGCAGCAGCTACAGCTGCGAAGTGTCAGTTCAAGGGACCTTGGTGCCAACAGTCCTGTCTCCATTGTTGGCTCCCCTGTAAACGCTTGGTCCAAATGGGGATCTCCCAACGGAAAAGTTGATTGGTCAGTAAATGGAGACGAGCTTGGTGGTCAGATGCGAAGATCATCCTCATTTGAGCTTAAGCACAACGGTGAAGAGCCTGATCTGTCATGGGTCCAGTCTCTGGTTAAGGAATCCCCACCTGAGATGATCAAGGAGAAGTTTGGTTCTCCTCTGCCTACAGCACCATCAGCGGATGGACCAAATTCTAACTCCCAAATGGAATCCATTGATCATTCCGTTTTAGGAGCCTGGCTTGAGCAAATGCAACTGGATCAGCTGGTAGTCTAG 2124 0.4995 MKTLTVNTEDSFSSLLELASNNDIEAFKVLLEKDPAAINEVGFWYGRQNGSKQIVLEHRTPLMVAATYGSNDVLKLILMCPEADVNFACGANKTTALHCAASGGSANAVETVKLLLSAGADASCMDAFGNRPVDVTVVPPKLQEMKPVLEDLLSDSASDGFIGGSIGEFSVPVSVNSSSPGSPNGLPYSPLESPPSPVVAKFTEAAIGSFSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYASTGSAVPSPRSSASGPNVMDMAAAMSLLPGSPSSVSSMSPSHFGQPMSPSANGMSLSSGAWAQPNVPALHLPGSNLQSSRLRSSLSARDIPPEDFNGMLDLDGHQHQHPLNDLSCYLQPRPGSGCVSRSGRSKTLTPANLEDLFSAEISSSPRYSDPAAASVFFPTHKSAVLNQFQQIQSMLSPINTNLLSPKSVDHPLLQASFGVSPSGRMSPRSLEPISPMSTRLSAFAQRERQQQQQLQLRSVSSRDLGANSPVSIVGSPVNAWSKWGSPNGKVDWSVNGDELGGQMRRSSSFELKHNGEEPDLSWVQSLVKESPPEMIKEKFGSPLPTAPSADGPNSNSQMESIDHSVLGAWLEQMQLDQLVV* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2202 707 Pfam Ankyrin repeats (3 copies) 19 124 IPR002110 GO:0005515
Pvu11g2202 707 Gene3D - 274 337 - -
Pvu11g2202 707 SMART ANK_2a 57 87 IPR002110 GO:0005515
Pvu11g2202 707 SMART ANK_2a 92 124 IPR002110 GO:0005515
Pvu11g2202 707 SMART ANK_2a 10 40 IPR002110 GO:0005515
Pvu11g2202 707 PANTHER UNKEMPT FAMILY MEMBER 1 705 IPR045234 -
Pvu11g2202 707 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 1 705 - -
Pvu11g2202 707 SMART c3hfinal6 309 332 IPR000571 GO:0046872
Pvu11g2202 707 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Pvu11g2202 707 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Pvu11g2202 707 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Pvu11g2202 707 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 299 IPR000571 GO:0046872
Pvu11g2202 707 SUPERFAMILY Ankyrin repeat 10 137 IPR036770 -
Pvu11g2202 707 MobiDBLite consensus disorder prediction 662 686 - -
Pvu11g2202 707 ProSiteProfiles Zinc finger C3H1-type profile. 279 301 IPR000571 GO:0046872
Pvu11g2202 707 Gene3D - 2 146 IPR036770 -
Pvu11g2202 707 MobiDBLite consensus disorder prediction 375 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2202 Pvu-Chr11 49570751 49573420 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu11g2202 Ank_2 3.7e-10 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0230 5 1949246 1953750 Pvu11g2202 11 49570751 49573420 ECH
Pvu11g2202 11 49570751 49573420 Pvu11g2202 11 49570751 49573420 ECH
Pvu11g2202 11 49570751 49573420 Pvu5g0230 5 1949246 1953750 PCT