Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2200 ATGGAGTCTGAAGGCGAAGCTGGGGCAAAGCCAGTGACAGCATTGAGTGCCCAAGTGTGCCAGATATGTGGTGATGGCGTTGGGAAGAATGTGGATGGTGAACCTTTCATTGCGTGCGATGTTTGTGCTTTCCCTGTATGCAGACCTTGTTATGAGTATGAAAGGAAGGATGGGAATCAGTCTTGCCCCCAGTGCAAAACCCGGTACAAGAGGCACAAAGGAAGTCCGGCAATTCTTAGAGACACGGAAGAGGATGGTGCTGCTACTGATATTGCCAGCGACTTTAATTACGATTCAGACAATCAAAACCAAAAGCAGAAGATTTCAGACCGCATGTTAAGCTGGCAATTGACTTATGCACGAGGCGAGGAGGTTGGTGCTCCAAATTATGATAAGGAAGTTTCTCACAACCACATTCCTCTGCTGACCAGTGGACAAGAGGTATCTGGAGAGTTGTCTGCAGCCTCTCCTGAGAGGCTCTCAATGGCATCTCCTGCAGTTGGTGGAGGAAAACGTGTCCATAATATTCCATATTCATCTGATATCAATCAATCTCCTAATATCAGGGCTGGGGATCCAGGTTTGGGTAATGTTGCATGGAAAGAAAGAGTTGATGGCTGGAAGATGAAGCAAGAAAAGAATGTTGTTCCAATGAGTACCGGGCAAGCTGCTTCTGAGAGAGGAGCTGGAGATATTGATGCTGCTACAGACGTGCTTGTGGATGATTCCTTGTTGAATGATGAAGCTCGACAGCCTCTTTCTAGGAAGGTTTCTATTTCATCATCCAGGATAAATCCATATCGTATGGTCATTATGTTGCGGCTGGTTATTCTTTGCGTTTTCTTGCATTATCGGATAACGAATCCAGTGCCCAATGCTTATCCATTGTGGTTGGTATCAGTTATATGTGAGATTTGGTTTGCCATCTCTTGGATATTGGATCAATTCCCCAAGTGGCTTCCTGTCAACCGAGAAACATATCTTGACAGGCTTGCATTGAGGTATGATCGGGAAGGAGAACAGTCACAGCTAGCTGCTGTTGACATTTTTGTGAGTACTGTTGACCCATTAAAGGAGCCCCCTCTTGTGACTGCCAATACTGTATTGTCTATTCTGGCAGTTGACTACCCAGTGGATAAGGTCTCCTGCTATGTTTCTGATGATGGTGCTGCTATGTTGACATTCGAAGCCCTTGCCGAGACATCAGAATTTGCAAGGAAATGGGTTCCCTTTTCCAAGAAGTATAGCATTGAACCCCGTGCACCCGAGTGGTACTTTGCACAAAAGATTGACTACTTGAAAGATAAGGTTCATCCATCATTTGTCAAGGATCGTAGAGCAATGAAGAGAGAATATGAGGAATTTAAAGTTCGAATCAATGGACTTGTTGCAAAGGCGCAGAAAATTCCCGAAGAAGGATGGGTGATGCAAGATGGTACACCATGGCCTGGAAATAACATCAGAGACCATCCAGGAATGATCCAGGTTTTCTTGGGCCAAAGTGGAGGACTTGACACTGAGGGCAATGAACTTCCCCGTCTAGTTTATGTGTCTCGTGAAAAGCGCCCAGGTTTCCAACATCACAAGAAAGCTGGTGCCATGAATGCACTTGTAAGAGTATCTGCTGTTCTTACTAATGGACCTTTCTTATTGAATCTTGATTGTGATCACTACATAAACAACAGCAAGGCCTTGAGGGAAGCTATGTGCTTTATGATGGATCCCAACCTTGGTAAACATGTTTGCTATGTCCAGTTTCCACAGAGGTTTGATGGTATTGATAGAAATGATCGTTATGCCAATCGTAATACAGTGTTCTTTGATATAAACTTGAGAGGCTTGGATGGCATTCAGGGTCCTGTTTATGTTGGTACTGGATGTGTCTTCAATAGGACAGCTTTATATGGTTATGAACCTCCTCTTAAACCCAAGCATAAAAAGCCCGGGTTTTTGTCGTCGCTCTGTGGTGGAAATCGGAAGAGTTCAAAATCTAGCAAGAAAGGATCAGACAAGAAAAAATCTAGCAAGCATGCTGACCCAACTGTACCTATCTTCAGTCTAGAGGATATAGAAGAAGGAGTAGAAGGTACTGGATTTGATGATGAGAAATCACTTCTTATGTCACAAATGAGCCTTGAGAAAAGGTTTGGTCAGTCTGCAGTTTTTGTAGCCTCCACCCTTATGGAGAATGGTGGTGTTCCTCAGTCTGCTACTCCAGAAACTCTTCTTAAGGAGGCTATTCATGTTATCAGCTGTGGTTATGAGGATAAATCAGAATGGGGATCCGAGATAGGATGGATTTATGGTTCCGTCACAGAAGATATTCTTACCGGATTTAAGATGCATGCCCGCGGTTGGCGGTCTATATACTGCATGCCGAAGCGGCCGGCGTTTAAAGGTTCGGCTCCCATCAATCTTTCAGACCGTCTAAACCAAGTGCTTCGGTGGGCTTTAGGTTCTGTGGAGATTCTTTTTAGCAGACATTGTCCCATCTGGTATGGTTATGGTGGAAGGCTAAAGTGGCTTGAAAGGTTCGCTTATGTGAACACCACAATCTATCCACTCACGGCCATTCCCCTTCTCATTTATTGTATCTTGCCTGCTGTCTGTCTGCTCACCAACAAGTTCATCATTCCGCAGATCAGTAACCTTGCAAGCATATGGTTCATCTCTCTCTTTCTCTCCATCTTTGCTACCGGAATCCTGGAGATGAGGTGGAGCGGCGTAGGAATCGACGAGTGGTGGAGGAACGAACAGTTTTGGGTCATCGGCGGTGTCTCGGCCCATCTCTTTGCCGTTTTCCAGGGCCTTCTCAAAGTGCTTGCTGGAATTGACACCAACTTCACTGTCACCTCCAAGGCCTCAGACGAAGATGGAGATTTTGCTGAGCTCTACATGTTCAAATGGACCACCCTTCTCATCCCCCCCACAACACTTCTCATAATAAACATGGTAGGAGTTGTTGCTGGCATCTCCTATGCCATCAACAGTGGCTACCAATCATGGGGACCCCTCTTTGGCAAGCTTTTCTTTGCATTTTGGGTCATCGTCCATCTCTACCCTTTCCTCAAAGGTCTCATGGGGCGCCAGAACAGAACACCAACCATTGTGGTGGTGTGGTCCATTCTCCTTGCATCCATTTTCTCTCTGTTGTGGGTCAGAATTGACCCTTTCACCACAAGGGTCACTGGCCCTGATGTTGAAGAGTGTGGTATCAACTGCTAG 3225 0.4552 MESEGEAGAKPVTALSAQVCQICGDGVGKNVDGEPFIACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPAILRDTEEDGAATDIASDFNYDSDNQNQKQKISDRMLSWQLTYARGEEVGAPNYDKEVSHNHIPLLTSGQEVSGELSAASPERLSMASPAVGGGKRVHNIPYSSDINQSPNIRAGDPGLGNVAWKERVDGWKMKQEKNVVPMSTGQAASERGAGDIDAATDVLVDDSLLNDEARQPLSRKVSISSSRINPYRMVIMLRLVILCVFLHYRITNPVPNAYPLWLVSVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEQSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALAETSEFARKWVPFSKKYSIEPRAPEWYFAQKIDYLKDKVHPSFVKDRRAMKREYEEFKVRINGLVAKAQKIPEEGWVMQDGTPWPGNNIRDHPGMIQVFLGQSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGFLSSLCGGNRKSSKSSKKGSDKKKSSKHADPTVPIFSLEDIEEGVEGTGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPETLLKEAIHVISCGYEDKSEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYVNTTIYPLTAIPLLIYCILPAVCLLTNKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINMVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEECGINC* 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2200 1074 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 94 IPR013083 -
Pvu11g2200 1074 SUPERFAMILY RING/U-box 5 90 - -
Pvu11g2200 1074 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 474 638 IPR029044 -
Pvu11g2200 1074 SUPERFAMILY Nucleotide-diphospho-sugar transferases 361 876 IPR029044 -
Pvu11g2200 1074 PANTHER CELLULOSE SYNTHASE 5 1074 - -
Pvu11g2200 1074 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 5 1074 - -
Pvu11g2200 1074 Pfam Zinc-binding RING-finger 10 86 IPR027934 -
Pvu11g2200 1074 MobiDBLite consensus disorder prediction 648 679 - -
Pvu11g2200 1074 CDD mRING-HC-C4C4_CesA_plant 18 68 - -
Pvu11g2200 1074 Pfam Cellulose synthase 347 1067 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2200 Pvu-Chr11 49542339 49550516 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g2200 11 49542339 49550516 Pvu5g0231 5 1967500 1975402 PCT