Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2198 ATGCCAGGAAAACCTGACACTGATGATTGGCATGAGCAGATTCAGTTTCATCCTTGGTGGCGCGCAGTTGGGGAAAATGCCTCCAAATCATCTTCAGCTGATCAGTTAAATGGTTCTTCTTCAGTCCCTGGAACTGATAAGACAGGTGGATGTGCTGCTAAAGAGTACCAAAACATCAAACATGACATGTCTTCAATTCCATTTACCATGGACAAACACCTTGCTCCCAATCCCCACACGGAATTTGTTGGTCACTCAGTTGTTTTAACATCTCCTTATTTAGATGCACAGTATGGTCAGATGTTGACTACGTACGGCCAACAAGTTATGATAAACCCTCCATTGTATGGAATGCATCAAGCTAGAATGGCTTTGCCACTTGAAATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAATCACGTGCTAAGGCTGAACTTGAAAAGAAAGTAATTAGAAATAGAAAGCCATACCTCCACGAATCCCGGCACCTACACGCCATCAGAAGGGCAAGAGGCAATGGTGGTCGCTTTCTGAACACAAAGAAGCTTGAAAATAACAGTTCTGACATCACTTCTGACAAAGGCAACAATGGTGGTGCAAACCCCTCAACAAACTCATTTCACACTCTACATGTGCTCTCCAACAATGAGAATCTAGGCTCATCAAAAACAGTTCAGGACATGCACAGAGTGCAGAGTTTCAACAATGGCTACCATAATGAAAATGGTCTTACAGCACTATACCTTCCACAAGTCAATGGAAAGAAGGAGAGAGACCCTCTTGGGGCTTTCAAATAG 828 0.4324 MPGKPDTDDWHEQIQFHPWWRAVGENASKSSSADQLNGSSSVPGTDKTGGCAAKEYQNIKHDMSSIPFTMDKHLAPNPHTEFVGHSVVLTSPYLDAQYGQMLTTYGQQVMINPPLYGMHQARMALPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIRNRKPYLHESRHLHAIRRARGNGGRFLNTKKLENNSSDITSDKGNNGGANPSTNSFHTLHVLSNNENLGSSKTVQDMHRVQSFNNGYHNENGLTALYLPQVNGKKERDPLGAFK* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2198 275 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 132 187 IPR001289 GO:0003700|GO:0006355
Pvu11g2198 275 ProSiteProfiles NF-YA/HAP2 family profile. 130 190 IPR001289 GO:0003700|GO:0006355
Pvu11g2198 275 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 26 250 IPR001289 GO:0003700|GO:0006355
Pvu11g2198 275 PRINTS CCAAT-binding transcription factor subunit B signature 133 155 IPR001289 GO:0003700|GO:0006355
Pvu11g2198 275 PRINTS CCAAT-binding transcription factor subunit B signature 164 187 IPR001289 GO:0003700|GO:0006355
Pvu11g2198 275 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1 26 250 - -
Pvu11g2198 275 MobiDBLite consensus disorder prediction 189 218 - -
Pvu11g2198 275 ProSitePatterns NF-YA/HAP2 subunit signature. 135 155 IPR018362 GO:0003677|GO:0016602
Pvu11g2198 275 MobiDBLite consensus disorder prediction 186 218 - -
Pvu11g2198 275 Gene3D - 130 191 - -
Pvu11g2198 275 MobiDBLite consensus disorder prediction 26 46 - -
Pvu11g2198 275 SMART cbf3 129 190 IPR001289 GO:0003700|GO:0006355
Pvu11g2198 275 MobiDBLite consensus disorder prediction 26 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2198 Pvu-Chr11 49520372 49525622 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pvu11g2198 CBFB_NFYA 1.3e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g2198 11 49520372 49525622 Pvu11g2198 11 49520372 49525622 ECH