Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2197 ATGGGGGATGATGGAAAGAAGAACGGTGCAGAGGGGGGGTTGGTGAAGGTGGACCCAAAACCAACCAATGGCTTCACCTCAAAAGTCATTGATTTGTTGGAGAAGCTGCTGGTGAAGTTTTTGTATGATTCTTCACTGCCCCACCACTACCTCACTGGTAATTTTGGTCCTGTTACTGAGACCCCTCCCACCAAGGATCTTCCTGTCAAAGGGCACCTCCCTGATTGCTTGAACGGGGAGTTTGTCAGAGTTGGACCTAATCCAAAGTTTGCTCCTGTTGCTGGATATCACTGGTTTGATGGAGATGGAATGATTCATGGTTTGCGCATCAAAGATGGAAAAGCTACATATGTTTCACGTTTTGTGGAAACTTCTCGTCTTAAACAAGAAGAATACTTTGGACGGTCCAAATTTATGAAGATTGGAGATCTCAAGGGTCTATTTGGACTTTTAATGGTTAACATTCATATGCTGAGAACTAAATTGAAAGTGTTGGATCTTTCTTATGGAGGTGGAACAGCCAATACTGCTCTCGTATATCATCATGGGAAGCTTCTAGCTCTCTCAGAAGCAGATAAACCCTATGCTATTAAAGTTTTTGAAGATGGTGATTTGCAGACACTTGGAATGCTAGATTATGATAAAAGATTGGGTCACTCCTTCACTGCTCATCCCAAAGTTGACCCTTTTACTGGGGAGATGTTTTCATTTGGCTATGCACATACACCACCATATATCACATACAGAGTAATTTCAAAGGATGGTTATATGCATGATCCTGTACCCATAACAATTTCAGATCCCATCATGATGCATGACTTTGCCATCACAGAGAATTATGCAGTATTCATGGATCTTCCTCTGATTTTTAGGCCAAAGGAAATGGTGAAGAATAAGACATTGATATTCTCATTTGATTCAACCAAGAAAGCTCGTTTCGGTGTGCTACCTCGGTATGCTAAGGATGAACAGCATATTAGATGGTTTGAGCTACCAAACTGCTTCATATTCCACAATGCCAATGCATGGGAGGAGGAAGATGAAGTTGTTCTGATCACATGCCGCCTTCAGAATCCAAAGTTGGACAATGTTGGTGGGACTGTCCAGGAAAAGCTTGAAAATTTCTCAAATGAGCTGTATGAAATGAGATTCAACATGAAAACTGGTGAAGCTTCTCAAAAGAAACTATCAGCATCTACTGTAGATTTTCCCAGGGTGAATGAAAACTACACTGGCAGGAAGCAGCGATATGTGTATGGGACCACATTAGACAGCATTGCAAAAGTTACTGGTATTATTAAATTTGATTTGCATGCTGAACCAGATCATGAAAAAGAGAAACTTGAAGTTGGAGGAAATGTTCAGGGTCTCTATGACTTAGGACCAGGAAAATTTGGCTCTGAAGCTGTTTATATTCCTCGTGTCCCCGGAATTGAGTCTGAAGAAGATGATGGATACTTGGTGTTGTTTGTACATGATGAAAATGCCGGAAAATCATTTGTGCATGTCATTGATGCAAAAACAATGTCAGCAGATCCTGTTGCGGTTGTGGAATTGCCCAATAGAGTTCCATATGGTTTCCATGCCTTCTTTGTGACTGAGGAACAATTGCAAGAACAAGCAAAACTGTGA 1632 0.4118 MGDDGKKNGAEGGLVKVDPKPTNGFTSKVIDLLEKLLVKFLYDSSLPHHYLTGNFGPVTETPPTKDLPVKGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVETSRLKQEEYFGRSKFMKIGDLKGLFGLLMVNIHMLRTKLKVLDLSYGGGTANTALVYHHGKLLALSEADKPYAIKVFEDGDLQTLGMLDYDKRLGHSFTAHPKVDPFTGEMFSFGYAHTPPYITYRVISKDGYMHDPVPITISDPIMMHDFAITENYAVFMDLPLIFRPKEMVKNKTLIFSFDSTKKARFGVLPRYAKDEQHIRWFELPNCFIFHNANAWEEEDEVVLITCRLQNPKLDNVGGTVQEKLENFSNELYEMRFNMKTGEASQKKLSASTVDFPRVNENYTGRKQRYVYGTTLDSIAKVTGIIKFDLHAEPDHEKEKLEVGGNVQGLYDLGPGKFGSEAVYIPRVPGIESEEDDGYLVLFVHDENAGKSFVHVIDAKTMSADPVAVVELPNRVPYGFHAFFVTEEQLQEQAKL* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2197 543 Pfam Retinal pigment epithelial membrane protein 58 532 IPR004294 GO:0016702
Pvu11g2197 543 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 1-3 5 539 - -
Pvu11g2197 543 PANTHER BETA-CAROTENE DIOXYGENASE 5 539 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2197 Pvu-Chr11 49512034 49518760 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g2197 11 49512034 49518760 Pvu11g2197 11 49512034 49518760 ECH