Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2196 ATGCACATCAAGGAGGTTTGCTTGGAAGGGTTCAAGTCCTACGCCACGCGCACCGTCGTTCCGGGCTTCGACCCCTTCTTCAACGCCATCACCGGCTTGAACGGTTCAGGCAAATCCAACATTCTCGATTCCATCTGCTTCGTTCTCGGCATCACCAATTTGCAGCAGGTTAGGGCTTCCAACCTCCAGGAACTCGTCTACAAGCAGGGCCAGGCCGGAATCACCAAAGCCACCGTCTCCATCCTCTTCGACAACTCCGACCGGTCGCGAAGCCCTCTCGGCTACGAAGGCCATTCTGAGATCACTGTCACAAGACAGATTGTTGTTGGGGGAAGGAACAAATATTTGATCAATGGGAAGCTTGCACAGCCTAGTCAAGTTCAGAACCTTTTTCATTCAGTACAGCTAAATGTTAATAATCCACATTTCCTTATAATGCAAGGGCGTATCACTAAGGTTTTGAATATGAAACCGCCAGAGATATTGTCTATGCTTGAGGAAGCTGCAGGGACAAGAATGTACGAGACAAAGAAAGAGGCTGCTCTAAAAACACTCGAGAAGAAGCAGAGCAAGGTTGACGAGATTAACAAGCTTCTTGACCAGGAAATACTGCCTGCTTTGGAGAAGTTAAGGAAAGAAAAGACACAGTACATGCAATGGGCTAATGGCAATGCTGACTTAGATAGGCTGAGAAGGTTCTGTGTTGCTTATGATTATGTTCAAGCGGAGAGGATTAAAGACAATGCTGCTTTGGAGGTGGAAGAAGTGAAAGCCAAGATAGCTGAGATTGATGATCTTGCTAAGACAAATCAGGTGGAAATAAAGGAAATGGAGGTCAAAATAGCTCAGTTGACTGTTGAAAAGGAAGCTAGCATGGGTGGAGAAATGAAATCTCTCTCTGAGAAGGTAGATGCGCTTTCCCAGAATCTTGTGAGGGAAACGTCTGTATTAAATAACAAAGAAGACACTTTGAGGAGTGAAGAAGCCAACAAAGCAAATATTGTTAAAAACATTGAAGAGTTGAAGCAATCTGTGGAAGAGAAGGCGTCTTCTGTTAAAAAGGCTGAAGAGGGGGCATCAGATCTGAAAAACACAGTTGGCGAGCTTACAAAGAGTCTAGAGGAGCATGAAAAAGAATACCAGGGTATTTTAGCTGGGAAGAGCAGTGGTAATGAGGAGAAGTGCTTAGAGGATCAACTAAGGGATGCAAAGGTAGCAGTTGGGAGTGCCGAGACAGAATTGAAACAACTGAAAGCCAAGATTAGCCACTGTGAAAAGGAACTGAAAGAAAAATCAAGTCAATTAAGTTCAAAACGTGAAGAAGCTAGTGCTGTCGTAAGAGAGCTGAACTCCAGACAAAAAGATGTGGAGAATATTAGAACAGAGTTGGAGTCTCTTTCATATAAAGAGGGTGAGATGGAGGATTTACAGAAGGAGCGTATGACCGAGATGGACTGTGTGCAAAAGTGGAAGGATGAAATACGCAATCTTTCAGCTTACCTGGCGAATGTTGAATTTACATATCGTGATCCTGTCAATAATTTTGATAGGTCAAAGGTGAAAGGTGTTGTTGCAAAACTCATCAAAGTAAAGGATAGGTCCACGATGACTGCCCTAGAGGTTACAGCTGCTGGAAAGTTGTATAATGTTGTTGTTGACACAGAAAATACTGGAAAGCAACTACTACAAAATGGAAATCTTAGAAGAAGAGTGACAATTATACCTCTGAACAAAATACAATCCCATCCCGTTCCCTCAAGAGTTCAACAAGCTGCTGTTAGATTGGTGGGGAAGGGGAATGCAGAAGTAGCCCTTTCTTTGGTTGGTTATGAGGAAGAATTAAAGACTGCAATGGAATATGTATTTGGTTCAACCTTTGTTTGCAAAACCATTGATGCTGCAAAGGAGGTGGCGTTTAATAGGGATATTCACACAACAAGTGTCACTCTTGAAGGAGATATATTTCAGCCAAGGGGTCTTCTGACTGGTGGAAGCAGGAAGGGAAGTGGTGATCTTTTGGGACGACTTCATGCTTTGGCTGAAGCTGAGTCTAAACTTTCAGTGCATCAAACAAGGTTGTCAGAGATCGAGGCAAAGAGCAGAGCTGAGCAAAATGAGCATCATAAGCTTGGAGAATTAGTGAAGAAGATTGAGCAAGAGCTAAATGAAGCAAAATTGACAGTCAAGGACAAACAATTTTTGTATGAGGAGTGTGTCAAAACTGTTTCGTCTCTTGAGAAATTAATACAGGACCATGACAATAGCAGAGAAAGTAGACTAAAAGGATTGGAGAAAAAGATAAAATCTATAAAATCTCAAATGCAATCATCTTTAAAAGATCTGAAGGGGCATGATAGTGAAAAGGAGAGACTTGTAATGGAAATGGAAGCTGTTATCCAGGAGCAAGCATCGTTGGAGAATCAGTTAGCATCATTGGGAACACTGATTAGCAATCTTGCCTCAGAAGTAGAAGAACAAAAATCCACAATTGTTGCAGTACGGAATAATCTTGATCAAGTTCAGTCAGAGTTGAAATCAGTTCGCCTGAAAATGAAAGAATGTGATAAGGAAATCAGTGCTATTGTTAAAGAGCAACAAAAGCTTGAACATAAAATTACTGAGAATAATCTAGAAAGGAAGAGGATGGAAAATGAGGTAAAACGAATGGAGATGGAACAGAAAGACTGCTCTGTTAGAGTAGATAAATTAATTGAGAAGCATGCTTGGATTGCTTCTGAAAAACAATTGTTTGGTCGAAGTGGGACTGATTATGATTTTTCTTCCTGTGATCCAAGTAAATCAAGGGAAGAACTTGAGAAGCTTCAGGCTGAGCAATCTGGGCTTGAGAAAAGGGTGAACAAGAAAGTGATGGCAATGTTTGAGAAGGCAGAGGACGAGTACAATGATTTGATGTCCAAAAAAAACATAATTGAGAATGACAAGTCCAAAATCAAGAAAGTGATTGAAGAGCTAGATGAGAAGAAGAAGGAGACACTAAATGTTACCTGGATCAAAGTGAATACTGACTTTGGGTCCATCTTTTCTACACTATTACCGGGAACAATGGCTAAGCTAGAACCACCAGAAGGATGCAGCTTCCTTGACGGTCTTGAGGTTCGTGTGGCATTTGGAAGTGTGTGGAAGCAGTCGTTGTCTGAATTGAGTGGAGGTCAGCGATCACTGCTTGCACTTTCTCTGATTCTGGCACTGCTTCTGTTCAAACCTGCTCCACTTTACATCCTTGATGAGGTTGATGCAGCTCTTGATTTGAGCCACACACAAAACATAGGGAGAATGATAAAGGCTCACTTTCCGCACTCTCAGTTTATTGTGGTTTCCTTGAAGGAAGGCATGTTCAATAACGCAAATGTTCTTTTCCGTACAAAATTTGTGGATGGTGTTTCAACTGTTCAGCGAACAGTTGCCTCTAAACAAAGCAAATGA 3444 0.4181 MHIKEVCLEGFKSYATRTVVPGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSILFDNSDRSRSPLGYEGHSEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINKLLDQEILPALEKLRKEKTQYMQWANGNADLDRLRRFCVAYDYVQAERIKDNAALEVEEVKAKIAEIDDLAKTNQVEIKEMEVKIAQLTVEKEASMGGEMKSLSEKVDALSQNLVRETSVLNNKEDTLRSEEANKANIVKNIEELKQSVEEKASSVKKAEEGASDLKNTVGELTKSLEEHEKEYQGILAGKSSGNEEKCLEDQLRDAKVAVGSAETELKQLKAKISHCEKELKEKSSQLSSKREEASAVVRELNSRQKDVENIRTELESLSYKEGEMEDLQKERMTEMDCVQKWKDEIRNLSAYLANVEFTYRDPVNNFDRSKVKGVVAKLIKVKDRSTMTALEVTAAGKLYNVVVDTENTGKQLLQNGNLRRRVTIIPLNKIQSHPVPSRVQQAAVRLVGKGNAEVALSLVGYEEELKTAMEYVFGSTFVCKTIDAAKEVAFNRDIHTTSVTLEGDIFQPRGLLTGGSRKGSGDLLGRLHALAEAESKLSVHQTRLSEIEAKSRAEQNEHHKLGELVKKIEQELNEAKLTVKDKQFLYEECVKTVSSLEKLIQDHDNSRESRLKGLEKKIKSIKSQMQSSLKDLKGHDSEKERLVMEMEAVIQEQASLENQLASLGTLISNLASEVEEQKSTIVAVRNNLDQVQSELKSVRLKMKECDKEISAIVKEQQKLEHKITENNLERKRMENEVKRMEMEQKDCSVRVDKLIEKHAWIASEKQLFGRSGTDYDFSSCDPSKSREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWIKVNTDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVRVAFGSVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVASKQSK* 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2196 1147 SUPERFAMILY Tropomyosin 678 863 - -
Pvu11g2196 1147 Coils Coil 953 997 - -
Pvu11g2196 1147 Coils Coil 178 198 - -
Pvu11g2196 1147 Pfam RecF/RecN/SMC N terminal domain 2 1132 IPR003395 -
Pvu11g2196 1147 Coils Coil 788 808 - -
Pvu11g2196 1147 Gene3D - 590 666 - -
Pvu11g2196 1147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1123 IPR027417 -
Pvu11g2196 1147 Pfam SMC proteins Flexible Hinge Domain 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Pvu11g2196 1147 Coils Coil 317 379 - -
Pvu11g2196 1147 Coils Coil 679 699 - -
Pvu11g2196 1147 PIRSF SMC 1 759 IPR024704 GO:0005524|GO:0016887
Pvu11g2196 1147 PIRSF SMC 736 1126 IPR024704 GO:0005524|GO:0016887
Pvu11g2196 1147 Coils Coil 863 899 - -
Pvu11g2196 1147 Coils Coil 239 287 - -
Pvu11g2196 1147 Coils Coil 400 441 - -
Pvu11g2196 1147 Coils Coil 446 466 - -
Pvu11g2196 1147 Coils Coil 760 780 - -
Pvu11g2196 1147 SUPERFAMILY Smc hinge domain 484 686 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Pvu11g2196 1147 CDD ABC_SMC2_euk 1 156 IPR027120 GO:0005524|GO:0016887
Pvu11g2196 1147 Coils Coil 707 727 - -
Pvu11g2196 1147 Gene3D - 771 860 - -
Pvu11g2196 1147 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2 1 699 - -
Pvu11g2196 1147 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2 701 1145 - -
Pvu11g2196 1147 Gene3D - 1 202 IPR027417 -
Pvu11g2196 1147 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2-2 1 699 - -
Pvu11g2196 1147 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2-2 701 1145 - -
Pvu11g2196 1147 Coils Coil 816 857 - -
Pvu11g2196 1147 Gene3D - 411 589 - -
Pvu11g2196 1147 Gene3D - 966 1146 IPR027417 -
Pvu11g2196 1147 SMART SMC_hinge_2 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2196 Pvu-Chr11 49497733 49507687 Dispersed