Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2194 ATGGGAAAGAAGAACAAAGTGAAGGATAATGGAGGCAAAGAGCATTGCTCCTCCACACTTTTTGTCTCCAACTTGCCCTATTCCTTTTCCAATTCTCAGTTGGAGGAGACGTTCAGTGAGATTGGACCTGTGAGGCGTTGCTTCATGGTCACACAGAAAGGATCAGCACAGCATCGTGGTTTCGGTTATGTCCAATTTGCTGTTGAGGAAGACGCCAACCGTGCTATTGAGCTGAAGAATGGTGTATCTGTTGAAGGCCGTAAAATTGGAGTGAAGAATGCAATGCCTCGTCCTCCCCGTGAGGAACGAAAGTCGAAACCAAATAAAGTAGCTAATGTAGTAGCGGGAACACCAGATGATCTTGTAAAACCAAAAGATGATGATGTGAAAGACAGCATATCATCTGGAACAGAGAAGCATGTTTCAGTTTTGAAGGAAGAAGCACAAGTCACAAGTAAACAGAAAAGCTCTAAGAAGCCTGTGGAAACGAAAAAATCAGCTCTTTGTAAAGATGCAGCAGATGATGGTGGTTGCTCAGAAAAACAGAGGGTTGCTAGAACTGTTATTTTTGGTGGCCTTATCGATTCTGATATGGCTGAAGAAGTTCACAACCAAGCCAGAGAGATTGGCACTGTGTGTTCTGTTAACTACCCTCTTTCAAGGAAAGATCTTGATCAACATGGTCTCATGCAAGATGGCTGTACCATGGATGCTACGTCTGTACTTTATACAAGTGTTAAATCAGCCCGAGCTTCTGTTGCAAAGTTGCATAAAAAAGTGATAAGAGGGGAAACAGTTTGGGCCCGCCAACTGGGTGGAGAGGGCTCCAAGACTCAGAAATGGAAGCTTATTATCAGAAACCTTCCTTTCAAGGCGAAAGATACTGAAATAAGAGATATGTTTTCATCTGCTGGATATGTGTGGGACGTATTTATTCCACAAAAGTCAGACACAGGTCTGTCTAAGGGCTTTGCATTTGTAAAGTTCACCTGCAAACAAGATGCAGAAAATGCCATTCAAAAGCTGAATGGATCAAAGTTTGCTAAACGAGTCATAGCTGTTGATTGGGCTGTTCCAAAGAAAATATTTAGTAGTGAAATGAATGATCCTCGTGCATCAGAGAAAGGACAACAAAACTTGAGTGATGAAGATAGTGATGAGGAAGATGTCGAGCTTGTTGATAAAATATCTGGTCAAGGAGATGATAATGATATGAACAGCCCTAGTGCCATGGAGGAAGAGGGAGCTCCTCCTGAAGATAATTTTGACGAGGAAGCAGACCTTGCAAGAAAGGTTCTTAACAACTTGCTTGGATCCTCAAGCAAAGGAACATCTGAAAACAATGATTCTATGTTGTCCAAAGAAAAGAAAGAGTCAAGATCGGATGAAGATTTTAAGAATGCAGATGGAAAAGTATCCGATGATTCTGAAAAGGTTTCAGGTGCTTCTAATCCTGAAATTTCCAGCAAAAACAACTTATCAAATCCTAACGGAACCGAAGAAGATTTGCAGAGAACAGTTTTTATAACTAATCTTCCCTTTGAATGTGATAACGAAGAAGTAAAACAACGATTTTCTGGGTTTGGGGAAGTAGAATACTTTGCTCCTGTTCTCCACCAAGTTACCAAGCGACCAAGAGGAACTGGTTTTCTAAAGTTTAAAACTGTAGAAGCAGCTAATACCGCAATTTCAACTGCTATTGCTGCTTCTGGGACAGGTATTTTACTTCAGGGTAGACCATTGAAAGTTTTAAAGGCTTTGGATAAGAAATCGGCACATGACAAGGAACTGGAGAAAGCAAAAAATGAGGTTCACGACCACCGAAATCTTTACTTGGCAAAGGAGGGACTTATTCTTGAGGGATCTACAGCCGCCGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAAGAGTTGGAGAGGAAAAAGAAGACAAAGCTTCAATCTCCGAATTTTCATGTTTCGAGAACTCGACTCGTGGTCTACAACTTACCCAAGTCAATGCATGAGAAAGAACTCAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAACCTGTAATTCGGCAGATAAAATTTTTGAAAAATGATAAGAATGGAAAGGTAGCTCAAGAACGATATTCTAGGGGAGTTGCCTTTATTGAATTTTCTGAGCATCAGCATGCTCTTGTGGCTCTGAGAGTTCTCAACAATAATCCTGAAACATTCGGTCCTGAACATCGACCGATCGTGGAGTTCGCGCTTGATAATGTTCAAACACTTAAACTTCGGAAGGCGAAGCTACAACAATTTCAGCAGCAGGCTCCTCAAGATGACAACAATGCCATGCGAAATGACAAACCTGGCAACAAAGAAGTTCACACGCCGGACAGAAAACGAAAGGCTAGGGAGCATGGTGAACCGGCAAAGGAAACAGTACTGAATACAAATGGTGAATCAGAGGCAAATGGAAAATCCCCTCAAGGACAAAAGTTCAAAAGACAGAAAGGCAACAACAAGACCAAAAGGGCACTGAAAGAAAATCCAGAAGCCTTGTCCATGAAGCCAAAGAATAACCAAAATGGCCAGAAAAGTGGTGGTGCAGCAGTTGAAGATCAAAACACTGCCACTGCCACTAACAGAAGAAAATCAGGAAACAAAGTCGATGATGATACTGGATTTAGAAAAAGAAAGATGCAGAATCAAGAACAAGAAGCAGGCCATAAGGTGGTTTCTAAGAAACGGCCTAAGAAGAATAAAAATTCAGTTGGAAAGGACGTAGTAGACAAGCTTGACATGCTTATAGAACAATATAGATCCAAGTTCTCACACAAGGGTTCCCAAGAGAATGCAGAGAAAAAACCTTCAAAACAGCTTAGGAAATGGTTCCAATCATAG 2889 0.414 MGKKNKVKDNGGKEHCSSTLFVSNLPYSFSNSQLEETFSEIGPVRRCFMVTQKGSAQHRGFGYVQFAVEEDANRAIELKNGVSVEGRKIGVKNAMPRPPREERKSKPNKVANVVAGTPDDLVKPKDDDVKDSISSGTEKHVSVLKEEAQVTSKQKSSKKPVETKKSALCKDAADDGGCSEKQRVARTVIFGGLIDSDMAEEVHNQAREIGTVCSVNYPLSRKDLDQHGLMQDGCTMDATSVLYTSVKSARASVAKLHKKVIRGETVWARQLGGEGSKTQKWKLIIRNLPFKAKDTEIRDMFSSAGYVWDVFIPQKSDTGLSKGFAFVKFTCKQDAENAIQKLNGSKFAKRVIAVDWAVPKKIFSSEMNDPRASEKGQQNLSDEDSDEEDVELVDKISGQGDDNDMNSPSAMEEEGAPPEDNFDEEADLARKVLNNLLGSSSKGTSENNDSMLSKEKKESRSDEDFKNADGKVSDDSEKVSGASNPEISSKNNLSNPNGTEEDLQRTVFITNLPFECDNEEVKQRFSGFGEVEYFAPVLHQVTKRPRGTGFLKFKTVEAANTAISTAIAASGTGILLQGRPLKVLKALDKKSAHDKELEKAKNEVHDHRNLYLAKEGLILEGSTAAEGVSASDMLKRQELERKKKTKLQSPNFHVSRTRLVVYNLPKSMHEKELKKLCIDAVISRATKQKPVIRQIKFLKNDKNGKVAQERYSRGVAFIEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKAKLQQFQQQAPQDDNNAMRNDKPGNKEVHTPDRKRKAREHGEPAKETVLNTNGESEANGKSPQGQKFKRQKGNNKTKRALKENPEALSMKPKNNQNGQKSGGAAVEDQNTATATNRRKSGNKVDDDTGFRKRKMQNQEQEAGHKVVSKKRPKKNKNSVGKDVVDKLDMLIEQYRSKFSHKGSQENAEKKPSKQLRKWFQS* 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2194 962 Gene3D - 656 751 IPR012677 -
Pvu11g2194 962 MobiDBLite consensus disorder prediction 117 166 - -
Pvu11g2194 962 MobiDBLite consensus disorder prediction 367 422 - -
Pvu11g2194 962 MobiDBLite consensus disorder prediction 938 956 - -
Pvu11g2194 962 MobiDBLite consensus disorder prediction 810 831 - -
Pvu11g2194 962 MobiDBLite consensus disorder prediction 436 501 - -
Pvu11g2194 962 SUPERFAMILY RNA-binding domain, RBD 18 267 IPR035979 GO:0003676
Pvu11g2194 962 MobiDBLite consensus disorder prediction 477 501 - -
Pvu11g2194 962 CDD RRM3_RBM28_like 505 586 - -
Pvu11g2194 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 89 IPR000504 GO:0003723
Pvu11g2194 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 352 IPR000504 GO:0003723
Pvu11g2194 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 507 564 IPR000504 GO:0003723
Pvu11g2194 962 MobiDBLite consensus disorder prediction 781 807 - -
Pvu11g2194 962 MobiDBLite consensus disorder prediction 766 780 - -
Pvu11g2194 962 CDD RRM2_RBM28_like 282 358 - -
Pvu11g2194 962 MobiDBLite consensus disorder prediction 449 476 - -
Pvu11g2194 962 PANTHER RNA BINDING PROTEIN 490 772 - -
Pvu11g2194 962 PANTHER RNA BINDING PROTEIN 7 394 - -
Pvu11g2194 962 MobiDBLite consensus disorder prediction 938 962 - -
Pvu11g2194 962 SMART rrm1_1 19 92 IPR000504 GO:0003723
Pvu11g2194 962 SMART rrm1_1 506 584 IPR000504 GO:0003723
Pvu11g2194 962 SMART rrm1_1 282 355 IPR000504 GO:0003723
Pvu11g2194 962 SMART rrm1_1 658 749 IPR000504 GO:0003723
Pvu11g2194 962 Coils Coil 583 610 - -
Pvu11g2194 962 MobiDBLite consensus disorder prediction 120 166 - -
Pvu11g2194 962 SUPERFAMILY RNA-binding domain, RBD 277 366 IPR035979 GO:0003676
Pvu11g2194 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 359 IPR000504 GO:0003723
Pvu11g2194 962 MobiDBLite consensus disorder prediction 766 925 - -
Pvu11g2194 962 MobiDBLite consensus disorder prediction 880 907 - -
Pvu11g2194 962 Gene3D - 269 391 IPR012677 -
Pvu11g2194 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Pvu11g2194 962 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 490 772 - -
Pvu11g2194 962 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 7 394 - -
Pvu11g2194 962 SUPERFAMILY RNA-binding domain, RBD 505 735 IPR035979 GO:0003676
Pvu11g2194 962 CDD RRM4_RBM28_like 657 754 - -
Pvu11g2194 962 CDD RRM1_RBM28_like 19 97 - -
Pvu11g2194 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 657 765 IPR000504 GO:0003723
Pvu11g2194 962 Gene3D - 2 109 IPR012677 -
Pvu11g2194 962 Gene3D - 438 602 IPR012677 -
Pvu11g2194 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 505 588 IPR000504 GO:0003723
Pvu11g2194 962 MobiDBLite consensus disorder prediction 850 879 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2194 Pvu-Chr11 49380143 49388270 Transposed