Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2193 ATGCAGATACTTGGACCTTACTTTGCAAAGTATCCCGGACTTGTTGATCAATTGATCAATGTGGTAACTGACCACGATGAAGACACTGCTATGTTCGAAGATCAACTAGACAATGGTTTGACATATCATAATGTCATAGATTCGGAGGGGAAGGATGTTAGTGCAGCTCCAATTCCTGTTATCCACATTGATTCAGATGTGGAAGATGATGGAGATGAAAGATCTATTGTTCCATTTCCTGAAGCTTCAGAGGAGGAAGATGATAGACATAATAAATCTATTGTTCCTTTTCATGAAGCTTCAAAAGAGGAAGATGATAGACATAATATATCTATTGTTCGTTTTCATGAAGCTTCAAAAGAGGAAGATGACAGACAAAAAAAATCTGTTGTTCCATTTCATGAAGCTTCAGAAGAGGAAGATGATAGACAAAAAAAATCTGTTGCTTCGTTTTATGAAATTGTGTTGCCGAGAGAAGTTGTACCATCTCCTGTTGTGATGAAGACAACTAGGCCGCGTACTCCCATGCGTAATCATGGCAAAAGTAAAGATCTGAAAATTGAGACAAGTATGGCGGATAAAGGTACCACTAGAGATAAAGGTGTTTATATCGGTGTAGAAGAGCAAGAGGATCTTCAGGTTGACACCGCAGATAATGAGGGCCTAGAAGATATTTGGAAGGAGATGTCAATGGCAATGGAGTGTTCCAAAGTTGTTTCCGCGAATCCTCTGCTAGATGAAGAAGTAGGAAGAGACCATGAAGAAGAAGAAAGAGATGAGGACTGCGATCATTCTTTGATTTTAAAAGATGATATTGGTTATGTTTGTCGGGTTTGTGGCATTATTGACCGAAGAATTGAAACCATATTTGAGTTTCAGTACAAGGTTAAACGGAGCACAAGGACTTATGCCTCTGACTCCTGTAAGACCAAAGCAAAAGCAGATGTATTTGGAATTAACGTTGTTGGAGATGACCTCATGGTTACTGAAATCCCAGCGCACCCTAGACACATGAAACAGATGAAACCCCATCAAGTTGAAGGATTCAATTTTCTTGGTAGAAATCTTGCAGGTGACCATCCTGGTGGCTGCATCTTAGCCCATGCTCCAGGATCTGGGAAAACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGCAAGTATCCGAATGCAAGACCCTTAGTGGTGCTTCCTAAGGGAATATTGTCAACATGGAAAAAGGAGTTTCAAATATGGCAGGTGGAGGACATACCTCTGTATGACTTCTACACAGTGAAGGCAGACAGCAGAAGTCAACAACTGGAAGTGCTGAAGCAATGGATGGAGAAGAAGAGTGTTCTTTTCCTAGGATACAAACAGTTCTCCTCTATTGTCTGTGATAATGGGACCAATAGTACATCATTATCTTGCCAAGATATTTTGCTCAAGGTTCCTTCAATTCTTATTTTAGACGAGGGACACAATCCTAGGAATGAAAACACAGATATGGTGCAGTCCCTTGCAAAAGTTCAAACGCCTAGAAAAGTTGTACTGTCAGGAACCCTTTATCAAAATCATGTCAGGGAGGTGTTTAACATTTTAAATCTTGTTCGGCCAAAATTTTTGAAGATGGAAACATCTAAGCCTATTGTGAGACGGATTGAAAGTAGAGTTCATATACCAGGAATGAGAACCTTTTATGATCTCGTTGAAAACACTTTGAAGGGCACAGATTTTAAAGGGAAAGTGGCTGTCATACGAGATTTGCGCGAGATGACAAGCAATGTCCTTCATTATTATAAAGGGGATTTTCTTGAAGAGCTTCCCGGTCTCGTTGATTTTACTGTGGTTCTCAATCTTAGCCCTAAACAAAAGCTTGACCTTGAAAGATTAAAGAAGTCATCTGGAAAGTTCAAGATATCTTCTGTAGGCAGTGCTCTCTATTTGCACCCCAAACTGAAATCTTTAGCTGAAAAATGTGGAGAAAATAATATATCTGATGATATACTCGATGCTCTGATAGAAAAATCAGATCCCAGAGATGGTGTGAAGTCCAAATTCTTCTGGAACATGCTAAATTTGTGTGAATCAGCCGGAGAGAAACTTCTAGTATTCAGTCAATATTTGCTTCCTTTGAAATATCTAGAAAGGTTAACCGTGCAAACCAAAGGGTGGAGTCTAGGCAGGGAAATATTTGTAATCTCAGGAGAATCAAGCTATGAGCAGAGAGAATGGTCCATGGAAAAATTTAACAATTCTCCAAATGCCAAAGTCTTCTTTGGCTCCATTAAGGCTTGTGGAGAGGGCATATCATTGGTCGGGGCATCACGCATAGTTATTTTGGACGTTCATCTTAATCCTTCAGTTACTCGCCAAGCTATTGGTCGAGCATTCAGACCGGGCCAGCAGAAGAAAGTCTTTGTGTATCGATTGGTGTCTGCAGATTCTCCAGAAGAGGAGGATAACAACACTTGTTTGAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAACGAGTATTGTGGTGATCGAGCATTTGAAGTTGAGCAAGTTCTTCTCAAAGACTGTAACGATCTTTTTCTTGAGAGTCCATTGCTAGGAGAAGATGTAAAAGCTCTGTACAAAAGGTAG 2616 0.3976 MQILGPYFAKYPGLVDQLINVVTDHDEDTAMFEDQLDNGLTYHNVIDSEGKDVSAAPIPVIHIDSDVEDDGDERSIVPFPEASEEEDDRHNKSIVPFHEASKEEDDRHNISIVRFHEASKEEDDRQKKSVVPFHEASEEEDDRQKKSVASFYEIVLPREVVPSPVVMKTTRPRTPMRNHGKSKDLKIETSMADKGTTRDKGVYIGVEEQEDLQVDTADNEGLEDIWKEMSMAMECSKVVSANPLLDEEVGRDHEEEERDEDCDHSLILKDDIGYVCRVCGIIDRRIETIFEFQYKVKRSTRTYASDSCKTKAKADVFGINVVGDDLMVTEIPAHPRHMKQMKPHQVEGFNFLGRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQIWQVEDIPLYDFYTVKADSRSQQLEVLKQWMEKKSVLFLGYKQFSSIVCDNGTNSTSLSCQDILLKVPSILILDEGHNPRNENTDMVQSLAKVQTPRKVVLSGTLYQNHVREVFNILNLVRPKFLKMETSKPIVRRIESRVHIPGMRTFYDLVENTLKGTDFKGKVAVIRDLREMTSNVLHYYKGDFLEELPGLVDFTVVLNLSPKQKLDLERLKKSSGKFKISSVGSALYLHPKLKSLAEKCGENNISDDILDALIEKSDPRDGVKSKFFWNMLNLCESAGEKLLVFSQYLLPLKYLERLTVQTKGWSLGREIFVISGESSYEQREWSMEKFNNSPNAKVFFGSIKACGEGISLVGASRIVILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVSADSPEEEDNNTCLKKELISKMWFEWNEYCGDRAFEVEQVLLKDCNDLFLESPLLGEDVKALYKR* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2193 871 SMART ultradead3 337 547 IPR014001 -
Pvu11g2193 871 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 355 534 IPR014001 -
Pvu11g2193 871 Pfam SNF2-related domain 361 618 IPR000330 GO:0005524|GO:0140658
Pvu11g2193 871 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 329 536 IPR027417 -
Pvu11g2193 871 CDD SF2_C_SNF 684 806 - -
Pvu11g2193 871 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 680 847 IPR001650 -
Pvu11g2193 871 SMART helicmild6 710 795 IPR001650 -
Pvu11g2193 871 Gene3D - 311 554 IPR038718 -
Pvu11g2193 871 MobiDBLite consensus disorder prediction 115 144 - -
Pvu11g2193 871 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 833 IPR027417 -
Pvu11g2193 871 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 871 IPR044567 GO:0080188
Pvu11g2193 871 PANTHER PROTEIN CHROMATIN REMODELING 35 1 871 - -
Pvu11g2193 871 Pfam Helicase conserved C-terminal domain 689 794 IPR001650 -
Pvu11g2193 871 Gene3D - 603 859 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2193 Pvu-Chr11 49371749 49376642 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu11g2193 SNF2_N 1.7e-19 CL0023