Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2191 ATGGAGCCCTCTGTTGATGTTGTGTCAAGTGCAAAACGCCCTCGACAAATGGGATTTTCTTCTGACCCGGGTGGAGACAAAAGACTGAAAGTTTCAAGTTATAGCCTGCCATACTCAACGCATGATAAGACTTCATATGTTGTTGATTACAGCAATCCATTTGCAATATCTGATGTTCTGGATAGTTTAGAGAGTGGAAAATTTGGAAGTGTCACAAAGGACATAGAGGACCTTATAGCCCAAAAAATGCAAATATTGGGCCCTTACTTTGTTAAATATCCCATTCTAGTGGATCAATGGGAGAAAGCGGTAATGAAACTTGATGAAGAAACTCCTAAGTTGGAAAATCAACTAGTTACTGTTTGGACGCATCAAAATGTCATAGATCTGGAGGGGGAACACACCAGAAAGGATCTCCCTGCAACACAAAATCATGTTGTGATTATTGATTCAGATGAGGAAGATGACAGAGATGAAAAATCTATGGTCCCATTTCATGAAGTTGTGTTGCCTAAACTAGTTGCACCGTCTCCTGCATTGAAGATACTTGGGTATCAACCTCCCATTCCTTACGCGGGAGAAAGAGATCTAAAAATTGAGACAAGTATGGAGGATAAACCTAACAACACTCAGAACAATAAAGGTGTTTATGTTGGTGTACTGGAAGAGGAAGAAGATGACATTGATATTGAAGATGATGGTCTAGAAGATATTTGGAAGGAGATGTCAATGGCTATAGAATGTTCCAAAGATGTTTCGGTTGATCCTCACCCAGATGAAGAAGCAGAAGAAGAAGATGATGAAGATGATGATGATTGTGATCATTCTTTTTTCTTAAAAGATGACCTTGGCTATGTTTGTCGTGTTTGTGGGGTTATTGAACGAGGAATTGAAACCATATTTGAGTTTCAGTACAAGGTTAAACGAAGCACAAGAACTTATGCGTCTGATTCATGGAATACCAAGAAAACAGATGTATTTGGAATTAATGTTGTTAAAGATGACCTCATAGTTACTGAAATCCCAGCGCACCCTAGACACATGAAACAGATGAAACCCCATCAAATTGAAGGATTCAATTTTCTTGGTAGAAATCTTGCAGGTGACCATCCTGGTGGCTGCATCTTAGCCCATGCTCCAGGATCTGGGAAAACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGCAAGTATCCGAATGCAAGACCCTTAGTGGTGCTTCCCAAGGGAATATTGTCAACATGGAAAAAGGAGTTTCAAATATGGCAGGTGGAGGACATACCTCTGTATGACTTCTACACAGTGAAGGCAGACAGCAGAAGTCAACAACTGGAAGTGCTGAAGCAATGGATGGAGCAGAAGAGTATTCTTTTCCTAGGATACAAACAGTTCTCCTCTATTGTCTGTGATAATGGGACCAATAGTACATCATTATCTTGCCAAGATATTTTGCTCAAGGTTCCTTCAATTCTTATTTTAGACGAGGGACACAATCCTAGGAATGAAAACACAGATATGGTGCAGTCCCTTGCAAAAGTTCAAACGCCTAGAAAAGTTGTACTGTCAGGAACCCTTTATCAAAATCATGTCCGGGAGGTGTTTAACATTTTAAATCTTGTTCGGCCAAAATTTTTGAAGATGGAAACATCAAAGCCTATTGTGAGGCGCATTGAAAGTAGAGTTCATATACCAGGAATGAGAACCTTCTATGATTTAGTTGAAAACACTTTGCAGAAGGACCCTGATTTTAAAAGGAAAATAGCTGTTATACAAGATTTACGTGAGATGACGAGCCAGGTACTTCACTATTATAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTTGTTGATTTTACCGTGGTGCTCACTCTTAGCCCTAGACAGAAGCCTGAAGTAGGGAAAATAAAAAAACTATCTAGCAGAAAGTTCAGGATATCTTCTATAGGAAGTGCTGTCTATTTGCATCCTAAACTGAAACCACTAGCAGAAAAGTGTGGTGAAAATTCTATATCTGATCATGTAATGGATGATTTGGTAGATAAACTGGATATTAGAGATGGTGTGAAGTCAAAATTTTATTACAACTTGCTAAATCTGTGTGAATCAGCAGGGGAGAAGCTTCTAGTTTTCAGTCAGTATCTGTTACCTTTGAAATATTTAGAAAGGTTGACTATGAAGTGGAAAGGCTGGAGTCTTGGAAGAGAAATTTTTGTAATCTCAGGAGAATCAAGCTCTGAGCACCGAGAATGGTCCATGGAAAAATTTAACAATTCTCGTGAAGCCAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAGGGTATATCACTGGTTGGTGCCTCTCGCATAATTATCTTGGACGTTCATCTCAATCCATCGGTTACGCGTCAAGCTATAGGTCGTGCATTCAGACCCGGCCAGACGAAGAAGGTTTTTGTGTATCGTTTAGTATCCGCTGATTCTCCGGAAGAGGAAGACCACCATGTTTGTTTCAAGAAAGAATTAATTTCAAAAATGTGGTTTGAATGGAATGAGTATTGCGGTGATCGAGCTTTTGAAGTTGAGGCAGTTGAGGTGAAAGAGTGTGGTGATGAATTTCTTGAAAGTCCACTGTTAGGGGAGGATGTAAAAGCTTTATATAAAAGGTGGTCAAGTGAATCAGAGCCTGGTTATCAGTATAAACAGAACAAGAGAATTTGA 2703 0.3944 MEPSVDVVSSAKRPRQMGFSSDPGGDKRLKVSSYSLPYSTHDKTSYVVDYSNPFAISDVLDSLESGKFGSVTKDIEDLIAQKMQILGPYFVKYPILVDQWEKAVMKLDEETPKLENQLVTVWTHQNVIDLEGEHTRKDLPATQNHVVIIDSDEEDDRDEKSMVPFHEVVLPKLVAPSPALKILGYQPPIPYAGERDLKIETSMEDKPNNTQNNKGVYVGVLEEEEDDIDIEDDGLEDIWKEMSMAIECSKDVSVDPHPDEEAEEEDDEDDDDCDHSFFLKDDLGYVCRVCGVIERGIETIFEFQYKVKRSTRTYASDSWNTKKTDVFGINVVKDDLIVTEIPAHPRHMKQMKPHQIEGFNFLGRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQIWQVEDIPLYDFYTVKADSRSQQLEVLKQWMEQKSILFLGYKQFSSIVCDNGTNSTSLSCQDILLKVPSILILDEGHNPRNENTDMVQSLAKVQTPRKVVLSGTLYQNHVREVFNILNLVRPKFLKMETSKPIVRRIESRVHIPGMRTFYDLVENTLQKDPDFKRKIAVIQDLREMTSQVLHYYKGDFLDELPGLVDFTVVLTLSPRQKPEVGKIKKLSSRKFRISSIGSAVYLHPKLKPLAEKCGENSISDHVMDDLVDKLDIRDGVKSKFYYNLLNLCESAGEKLLVFSQYLLPLKYLERLTMKWKGWSLGREIFVISGESSSEHREWSMEKFNNSREAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVFVYRLVSADSPEEEDHHVCFKKELISKMWFEWNEYCGDRAFEVEAVEVKECGDEFLESPLLGEDVKALYKRWSSESEPGYQYKQNKRI* 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2191 900 SMART ultradead3 347 557 IPR014001 -
Pvu11g2191 900 Gene3D - 320 564 IPR038718 -
Pvu11g2191 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 331 558 IPR027417 -
Pvu11g2191 900 Pfam Helicase conserved C-terminal domain 696 806 IPR001650 -
Pvu11g2191 900 Gene3D - 614 867 IPR027417 -
Pvu11g2191 900 CDD SF2_C_SNF 679 818 - -
Pvu11g2191 900 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 696 859 IPR001650 -
Pvu11g2191 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 845 IPR027417 -
Pvu11g2191 900 SMART helicmild6 722 807 IPR001650 -
Pvu11g2191 900 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 365 544 IPR014001 -
Pvu11g2191 900 MobiDBLite consensus disorder prediction 1 27 - -
Pvu11g2191 900 MobiDBLite consensus disorder prediction 249 273 - -
Pvu11g2191 900 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 15 883 IPR044567 GO:0080188
Pvu11g2191 900 MobiDBLite consensus disorder prediction 258 273 - -
Pvu11g2191 900 Pfam SNF2-related domain 371 559 IPR000330 GO:0005524|GO:0140658
Pvu11g2191 900 Coils Coil 97 117 - -
Pvu11g2191 900 PANTHER PROTEIN CHROMATIN REMODELING 35 15 883 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2191 Pvu-Chr11 49354763 49361393 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu11g2191 SNF2_N 3.9e-19 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g2191 11 49354763 49361393 Pvu11g2191 11 49354763 49361393 ECH