Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2161 ATGTCTATGCAGCATGAAAATTCTGATACAAAAGAAGTAATATGTCCCCAGAGAAGGCTAACAAATCTGATGCATCATTCTGGGAACAAGTTCTGTGCTGATTGTGGAACTCCAGAGCCAAAATGGGTATCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCTGGCATACATAGAAGTCTAGGAGTCCACATATCAAAGGTTCTATCATTGAAGTTAGATGAATGGACAGATGAACAAGTTGATGCATTGGCAAAATTAGGAGGAAATACATTATTAAACAAGAAGTATGAAGCTTGCCTCCCAAGTAACATGAGAAAACCAAAACCACATTCTTCCATTGAAGAACGCTCTGAATTTATTCGGAGAAAATATGAGATGCAACAGTTTATGGGGTGTGATGACCATATGGCAGGCACCATTGTCCAATCTCAAGGAAGAAGTATATCACTTGCTCAGTGCAGCTCTTCATACTATCATGCTTTTATGGACAAAAAACCATCTGAAAGATTTCCAAGCAAAACTCGAATTGGGAGTGCATTCCGAAATAGTTGGGGAAGAAAAGATTCTGAGCACAAGTCAAAGAAAAGTACCTCATTGGCAGGTATGGTTGAATTTGTTGGATTGATTAAGGTTAATGTGGTTAAAGGCACTCACCTAGCCGTTCGAGACGTAATGACTAGTGACCCTTATGTCATCCTTTCTTTGGGTCACCAATCAGTAAAAACACGAGTCATCAAGAACAATTTGAATCCAGTCTGGAATGAAAGTCTAATGCTTTCAATTCCAGAGAACATTCCTCCTCTAAAAGTGCTTGTGTATGACAAGGATACATTTTCAACTGATGATTTTATGGGAGAGGCTGAAATAGACATTCAACCTCTAGTTATAGCAGCAAAGGCCTATGAGAAATCCACTATCAATGAATCCATGCAGCTTGGTAAATTTGTAGCAAGCAAGGACAACACCCTTGTTAGAGATGGCATCATATCCCTTGATGAAGGCAAGATCAAACAGGAGATCTCAGTGAGACTACAGAACATTGAGAGAGGTGAACTTGAGCTTGAGCTTGAGTGTGTTCCTCTCACTCAATAG 1098 0.3944 MSMQHENSDTKEVICPQRRLTNLMHHSGNKFCADCGTPEPKWVSSSLGVFICIKCSGIHRSLGVHISKVLSLKLDEWTDEQVDALAKLGGNTLLNKKYEACLPSNMRKPKPHSSIEERSEFIRRKYEMQQFMGCDDHMAGTIVQSQGRSISLAQCSSSYYHAFMDKKPSERFPSKTRIGSAFRNSWGRKDSEHKSKKSTSLAGMVEFVGLIKVNVVKGTHLAVRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVIAAKAYEKSTINESMQLGKFVASKDNTLVRDGIISLDEGKIKQEISVRLQNIERGELELELECVPLTQ* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2161 365 SMART arf_gap_3 17 139 IPR001164 GO:0005096
Pvu11g2161 365 CDD ArfGap 20 126 - -
Pvu11g2161 365 Pfam Putative GTPase activating protein for Arf 18 132 IPR001164 GO:0005096
Pvu11g2161 365 ProSiteProfiles C2 domain profile. 191 307 IPR000008 -
Pvu11g2161 365 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 206 300 IPR035892 -
Pvu11g2161 365 Gene3D Arf GTPase activating protein 2 138 IPR038508 -
Pvu11g2161 365 SMART C2_3c 210 305 IPR000008 -
Pvu11g2161 365 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 139 IPR001164 GO:0005096
Pvu11g2161 365 SUPERFAMILY ArfGap/RecO-like zinc finger 17 132 IPR037278 -
Pvu11g2161 365 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 13 365 - -
Pvu11g2161 365 CDD C2_ArfGAP 208 352 - -
Pvu11g2161 365 Pfam C2 domain 210 296 IPR000008 -
Pvu11g2161 365 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Pvu11g2161 365 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Pvu11g2161 365 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Pvu11g2161 365 Gene3D C2 domain 207 365 IPR035892 -
Pvu11g2161 365 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 13 365 IPR044518 GO:0005096|GO:0005543
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2161 Pvu-Chr11 48868580 48873879 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0301 5 2650546 2659035 Pvu11g2161 11 48868580 48873879 PCT