Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2118 ATGGGGAGTAGAACTACCAGGGGTTTTGGTGTTGAAGATGACAAGGGAGCTGAAAGAGGAATGCCGAGCTTCAATTCTGAGTTACCCATTTCCAATTCTAGCTATGCAGAGGGGAGCACAATTGATTCTTTTCGTGTTTCTGACTTTGGTGCATTTGATCAGCCATATCGCGTAGAGGATGCTGTCTGCCTTAGTGGAAACCCAATTTACAACTCACTAAAAGTAAGTAGCCAAACAATTTCTCCGGGTTCTGTTCACATTAGTAGCCTTGGTCAGTTGCCAACTTCACTTGATAAAAGTCCATTGACGAATCAAACAGAGCTGCATAGGTTGCGATTACAGAAGGTTCAATCGTCAAATCCTGACACTATTTTAGTTGGTAATACAGATAATCAGGAGGAGTCTGCCATGGCTGATGCCAGTCCCAGGACTGATATTTCTACAGATGTCGACACTGATGACAAAAATCAGCCGTTTGATAGAAATCAATCCCTTGCTGCTGTTTCTGATTCTAGTGACAGGTCGAAAGATAAATCGGATCAAAAGACTCTTCGCAGGCTCGCCCAGAACCGTGAAGCTGCAAGAAAAAGCCGTTTGAGAAAGAAAGCCTATGTCCAACAGTTAGAAAGTAGTCGTTTGAAGCTGACCCAACTAGAGCAAGAGCTTCAGCGAGCTAGGCAGCAGGGGATCTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATGGGGCAATGCAATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGGCAAATAAATGAGCTAAGAGCAGCTGTAAATTCTCATGCAAGTGACACCGAACTGCGCATGATTGTTGATGGTATATTGGCACATTATGATGAGATTTTTAGGATGAAAGGTGTTGCTGCAAAGGCTGATGTTTTCCATCTGTTGTCTGGTATGTGGAAAACACCTGCTGAGAGGTGTTTTTTGTGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGCTGCTGGCAAATCAATTGGAACCTCTTACAGAGCAGCAGCTGATGGGTATCACCAACTTGCAGCAGTCTTCCCAACAAGCAGAAGATGCATTGTCTCAGGGCATGGAAGCACTGCAACAGTCCCTTGCGGAGACACTGTCCACCGGAGCACCTGCCTCATCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAGCTAGGGACACTTGAAGGGTTCATTCGACAGGCTGACAATCTTCGCCAGCAGACTCTACAACAAATGCACCGTATTCTGACAACTCGCCAATCGGCTCGTGCCCTCCTCGCTATTCATGACTATTTTTCACGACTGCGTGCTCTGAGTTCACTCTGGCTGGCTCGCCCAAGAGATTGA 1404 0.4608 MGSRTTRGFGVEDDKGAERGMPSFNSELPISNSSYAEGSTIDSFRVSDFGAFDQPYRVEDAVCLSGNPIYNSLKVSSQTISPGSVHISSLGQLPTSLDKSPLTNQTELHRLRLQKVQSSNPDTILVGNTDNQEESAMADASPRTDISTDVDTDDKNQPFDRNQSLAAVSDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHTLSGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGILAHYDEIFRMKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLANQLEPLTEQQLMGITNLQQSSQQAEDALSQGMEALQQSLAETLSTGAPASSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2118 467 Coils Coil 258 278 - -
Pvu11g2118 467 Pfam Basic region leucine zipper 178 224 IPR004827 GO:0003700|GO:0006355
Pvu11g2118 467 SMART brlzneu 178 241 IPR004827 GO:0003700|GO:0006355
Pvu11g2118 467 Coils Coil 201 228 - -
Pvu11g2118 467 CDD bZIP_HBP1b-like 182 234 - -
Pvu11g2118 467 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 185 200 IPR004827 GO:0003700|GO:0006355
Pvu11g2118 467 MobiDBLite consensus disorder prediction 1 33 - -
Pvu11g2118 467 Pfam Seed dormancy control 264 339 IPR025422 GO:0006351|GO:0043565
Pvu11g2118 467 ProSiteProfiles DOG1 domain profile. 247 464 IPR025422 GO:0006351|GO:0043565
Pvu11g2118 467 PANTHER TRANSCRIPTION FACTOR TGA9 59 467 - -
Pvu11g2118 467 Gene3D - 181 232 - -
Pvu11g2118 467 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 180 224 IPR004827 GO:0003700|GO:0006355
Pvu11g2118 467 MobiDBLite consensus disorder prediction 115 142 - -
Pvu11g2118 467 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 59 467 - -
Pvu11g2118 467 SUPERFAMILY Leucine zipper domain 182 225 IPR046347 GO:0003700|GO:0006355
Pvu11g2118 467 MobiDBLite consensus disorder prediction 115 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2118 Pvu-Chr11 48166330 48175959 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pvu11g2118 DOG1 5.2e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g2118 11 48166330 48175959 Pvu11g2118 11 48166330 48175959 ECH