Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2096 ATGGTGGCTAAACCAGGTTCGGTACCGGACTTCGAGGCGCTGAGAGAGCTGTTTAAGCATCACATAGAGTCCTTCGATCACATGGTAAAAGCTGGATTGGAAACCACTCTGCTACACATCAAACCCATCGAAGTGTTGGACGATTTCACGACCACAAAGCTTAGAATTTGGTTGGAGAATCCGGTGGTGTATCCACCGCAGAAGGAGCGAATTTCGAAGACGATGCGGGAGGCTTTACTTCCGTTTGAATGTAGACAGGCAAAGATTTCCTATGCAGGAAAGATAACTATAGATGTTTGCTTTCAATATAATGACGGGCCTGTTATTAGAGAAAATGTTAATTTTGGGCAGTTTCCCATAATGTTGCAGTCAAAGTTATGTAACTTGAGAGGTGCTGATCCCAAAAAACTTGTTTCCTGTAAGGAAGAAGCATCGGAAATGGGCGGTTACTTCATCTTGAATGGCCTCGAGAGAGTTATCCGACTGTTAATTTTGCCGAAACGGAATTATCCAATGAGTATGGTGCGGAGTTCATTTTGTGATCGGCGAGAAGGATATACAGATAAAGCAGTTGTAATAAGGTGTGTAAGAGCTGATCAGTCCTCGTTGTCAATAAGATTGTATTACCTTCGTAATGGGAGCGCAAGACTTGGTTTCTGGTTAAGGGGAAGGGAGTACTTACTTCCTGTGGGCATTGTTTTGAAGGCCCTCATTGACACAACTGACCGTGAAATTTATGTAAATTTGACAAGTTGCTATAATGAGAAGTATGCAAAGGGAAAGGGTGCTGTTGGGACCCAGCTTGTTGGTGAAAGGGCGAAAATAATCTTAGATGAACTTCGGGATTTGTCTCTATTCACCCGTCGTCAATGTCTAGAGTATATTGGAGAGCACTTCCAACCTATTATGCCTGAACTTATGAAAGACAGTTATGCTATTGTGGCTGATGCTGTTTTGAAGGATTGCATATTAGTTCATCTGGATAATGATTTCGACAAATTCAATCTTCTCATCTTCATGCTGCAGAAACTTTTCTCGCTTATAGATCAGACATCAGTTCCAGACAATCCTGATTCCTTGCAAAATCATGAGGTTTTACTCCCTGGCCACCTGATTTCACTTTATATCAAGGAAAAACTGGAAGATTGGCTGCAAAAAGGGAAAAAGCTTCTTATGGACGAGATCCAAAAAAAGAGCAATAAATTTGATTTCAGCGACATTGCTCAAGTGAAGAAAATCATGGATAAAAATTCAGCAAAGCTAGTCAGTGCATCAGTTGAAAACTTGTTGAAAACTGGAAGATTGGTGACCCAAACGGGTCTAGATCTGCAACAGAGGGCAGGTTATACAGTTCAGGCTGAAAGGCTAAACTTTTTACGATTTATGTCACATTTTCGTGCTGTTCATAGAGGGGCCTCATTTGCTGGACTCCGTACAACAACTGTTCGGAAGCTATTACCTGAATCTTGGGGCTTTCTTTGCCCTGTTCACACACCTGATGGAGAGCCTTGTGGATTGTTGAATCATATGACTCGCACTTGTAGGATAACATCATTTTTTGATTCTCAAGGAAACATTAAAGATTATTTTAAAATACAAAAGTCCATCCGAGATATTTTAATGGAGGTTGGGATGACATCATCATTGCCAAAGATATTTCTTCCTGGTCCACCTGAAGCTCTCACTGTTCTCTTAGATGGTTGTGTAGTTGGTTGTATAGCATCCAGTGAAGTGGAGAAAGTTGTGGCTTACATACGAGAATTAAAAGTCTCATCTGCTTCAGTGATTCCTGGTGATATGGAAGTGGGATATGTTCCTTTGAGCATGGGTGGAGCCTATCCTGGCTTATATCTGTTCACATCCCCTTCAAGATTTGTCCGACCAGTAAAAAATATATCAATTCCTTCCAATGGAAGTGAAAGCATCGAACTCATTGGGCCATTTGAGCAGGTTTTTATGGAAATTAGATGTCTTGATGGAGGAGACGGTGGAAGAAAAAGTTCATTTCCTGCAACTCATGAAGAAATCCACCCCACAGAAATGCTTAGTGTAGTTGCAAATCTCACCCCGTGGTCAGATCATAATCAGAGTCCACGAAATATGTACCAGTGCCAGATGGCAAAGCAAACAATGGCATTCTCTTCACAAACTATTCAACATCGTGCAGATCAGAAGTTGTATCATCTTCAGACTCCTCAGACTCCCATAGTACGCACAAGTACATATACTAAATACAACATTGATGAATTTCCGACAGGCACAAATGCTATAGTTGCAGTTCTGGCTTATACAGGATATGATATGGAGGATGCCATGATTCTAAATAAATCTTCAGTGGAACGTGGAATGTTTCATGGACAAATATATCAGACGGAAACTATTGACTTAACTGAACAAAGAGGGAAGTCAGACAGATCTTCGAGAATATTCAGAAAAAGTAATGTAGAGAAATTAGGTTGTCCCTCGATTGATTCAGATGGACTTCCACATGTTGGTCAGATGATACGACCAGATGAACCCTATTGTAGCATTTATAATGAAGTCACAAGTTCCACACAGACCTACAAAAGAAAGGGTTCTGAAGCTGTTTATGTTGATTATGTTGCTGTGGATGTCAAAAACAAGAAGCACATTCAGAAGGTTAACATACGCTTTCGACATCCTCGGAACCCTGTTATTGGGGACAAATTTAGCAGTAGACATGGACAGAAAGGTGTTTGCTCTCAGTTGTGGCCAGACGTTGATATGCCATTTTCTGGAAATACTGGCATGCGCCCAGATCTCATCATCAATCCTCATGCATTTCCTTCCAGGATGACAATTGCTATGCTTTTGGAATCAGTTGCTGCTAAGGGAGGTTCCTTGCGTGGAGAGTTTGTAGATGCAACTCCATTTCGAAGTTCAACAAAGAAAGACGGTGAGGGGTCTGATTCAAAATCAGGCTCACTTGTTGATGATCTTGGTGTCCTGCTAAAAGAAAAGGGATTTAATTATCACGGTTTGGAGGTTCTATACAGTGGTGTTTATGGAACAGAACTAACATGCGAAATATTTATTGGGCCTGTTTATTATCAGCGGCTGCGTCACATGGTTTCAGACAAATTTCAGGTTCGATCTACCGGCACAATTGACCAAGTCACCCGGCAGCCAATAAAAGGGCGGAAGCGCGGTGGAGGAATTCGATTTGGTGAAATGGAACGTGACTCTCTGCTTGCACACGGAGCTGCATATCTTCTGCATGATAGGCTGCACACCTGTTCTGATTATCACATTGCTGATGTATGTTCTCTTTGTGGAAGCATGCTTTCAACAACATTCATCCAGCCTCAAAAGAGACCAGTGCGCCAGATTGGAGGGCTACCCCCTGGAAGGCTACCCCCTGGAAGAGCTGCAAAAAAGGTTTCTTGTCATGCTTGCCAAACGAGTAAAGGCATGGAGACTGTCGCCATGCCCTATGTATTCAGATACTTGGCTGCAGAGTTAGCAGCAATGAACATAAAAATGACTCTCAAGCTCAATGATGGAGCTGAAGTTGGAGCCTAA 3543 0.42 MVAKPGSVPDFEALRELFKHHIESFDHMVKAGLETTLLHIKPIEVLDDFTTTKLRIWLENPVVYPPQKERISKTMREALLPFECRQAKISYAGKITIDVCFQYNDGPVIRENVNFGQFPIMLQSKLCNLRGADPKKLVSCKEEASEMGGYFILNGLERVIRLLILPKRNYPMSMVRSSFCDRREGYTDKAVVIRCVRADQSSLSIRLYYLRNGSARLGFWLRGREYLLPVGIVLKALIDTTDREIYVNLTSCYNEKYAKGKGAVGTQLVGERAKIILDELRDLSLFTRRQCLEYIGEHFQPIMPELMKDSYAIVADAVLKDCILVHLDNDFDKFNLLIFMLQKLFSLIDQTSVPDNPDSLQNHEVLLPGHLISLYIKEKLEDWLQKGKKLLMDEIQKKSNKFDFSDIAQVKKIMDKNSAKLVSASVENLLKTGRLVTQTGLDLQQRAGYTVQAERLNFLRFMSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHMTRTCRITSFFDSQGNIKDYFKIQKSIRDILMEVGMTSSLPKIFLPGPPEALTVLLDGCVVGCIASSEVEKVVAYIRELKVSSASVIPGDMEVGYVPLSMGGAYPGLYLFTSPSRFVRPVKNISIPSNGSESIELIGPFEQVFMEIRCLDGGDGGRKSSFPATHEEIHPTEMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQHRADQKLYHLQTPQTPIVRTSTYTKYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLTEQRGKSDRSSRIFRKSNVEKLGCPSIDSDGLPHVGQMIRPDEPYCSIYNEVTSSTQTYKRKGSEAVYVDYVAVDVKNKKHIQKVNIRFRHPRNPVIGDKFSSRHGQKGVCSQLWPDVDMPFSGNTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLRGEFVDATPFRSSTKKDGEGSDSKSGSLVDDLGVLLKEKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTIDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSLCGSMLSTTFIQPQKRPVRQIGGLPPGRLPPGRAAKKVSCHACQTSKGMETVAMPYVFRYLAAELAAMNIKMTLKLNDGAEVGA* 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2096 1180 Pfam RNA polymerase beta subunit 17 413 IPR007644 GO:0003677|GO:0003899|GO:0006351
Pvu11g2096 1180 Gene3D RNA polymerase alpha subunit dimerisation domain 1043 1174 - -
Pvu11g2096 1180 Pfam RNA polymerase Rpb2, domain 7 1058 1171 IPR007641 GO:0003677|GO:0003899|GO:0006351
Pvu11g2096 1180 Gene3D RNA polymerase Rpb2, domain 2 170 351 IPR037034 GO:0003677|GO:0003899|GO:0006351
Pvu11g2096 1180 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 8 1174 - -
Pvu11g2096 1180 Gene3D - 716 890 IPR014724 GO:0003899
Pvu11g2096 1180 CDD RNA_pol_B_RPB2 17 1171 IPR015712 GO:0003899|GO:0006351|GO:0032549
Pvu11g2096 1180 Gene3D - 352 549 - -
Pvu11g2096 1180 Gene3D - 9 169 - -
Pvu11g2096 1180 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA2 11 1170 - -
Pvu11g2096 1180 Pfam RNA polymerase I, Rpa2 specific domain 570 627 IPR009674 GO:0003899|GO:0005634|GO:0006351
Pvu11g2096 1180 Pfam RNA polymerase Rpb2, domain 3 453 516 IPR007645 GO:0003677|GO:0003899|GO:0006351
Pvu11g2096 1180 Gene3D - 686 1041 IPR037033 GO:0003677|GO:0003899|GO:0006351
Pvu11g2096 1180 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 11 1170 IPR015712 GO:0003899|GO:0006351|GO:0032549
Pvu11g2096 1180 ProSitePatterns RNA polymerases beta chain signature. 894 906 IPR007121 GO:0003677|GO:0003899|GO:0006351
Pvu11g2096 1180 Pfam RNA polymerase Rpb2, domain 2 193 365 IPR007642 GO:0003677|GO:0003899|GO:0006351
Pvu11g2096 1180 Pfam RNA polymerase Rpb2, domain 6 685 1056 IPR007120 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2096 Pvu-Chr11 47940955 47958622 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g2096 11 47940955 47958622 Pvu11g2096 11 47940955 47958622 ECH