Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2057 ATGGTGGTCTTATCTTCTTTCTGCTGCTCTGCACAATCACTGCTTGCCCGTGTGGCTATCATTATTGTACTATTCCGGCAAATTCACGCTGCCAAGGATCGTCCAATCTGTGCTCCTTCTTCCTACGACCCACCTGGTTGCGGGCTCCCAGGGTTCGAATTAGATTGCGTAAAGAATGTGACAGTCTTCACTTTGTTTTCAGGGAAATACCATGTTCACAATATCAGCTACCAAACATACAGCATCCAATTGACTGATGCAGGTGTTGAGGAGGACATTGCTTGCTCCATTCCTCGCTATTTCATCTCTACATCGAACTTCACTGACATTGCTCCACTAACTTTCTGGAATGAGTATATGTATGGGCCTTCTTATTGGCCTCCGTATGTAGCGTTTCTAAACTGTAGTGATCGAGTGAGTGATGATCCTCGATACGTGGAAGTGAATGGCAGGCTTTGTGATTCTGGAGGCCATGTCTATGCTGTTCTTGCTTCTTCTGGTCAATTCACAGTGATGGACATCAAGGTTGGGTGCCATTTAAAGGCTGCTACCTTTACAAACAATAGCCATTGCAACAAAGTTTCCTATGCTGATATCCATGAGTGCCTGCATAATGGGTTTTCGTTGTATTGGGTACCAGTTCTTTGTACAGACCAATGTGGAAAGGGTGTAGGATGCTTCGTCAATCAAACAACTAATCAAATTGAATGTCAACAAGATTACTATTGCCAAGTTTTAGGCCAAGACTTTGAAAAGATCCATTGCGGAAATCATGATCAAATTCTCTTATATATAGTTGCAATTCTATACTATATAGCAAGCTATGCTAAATACTGCATAATGGGACTAATGTCCACAATAACACGTTCACCTAACTATTCGGGATGGGAAGGAAATATCATTTCATTAGCCCCTATTCTAATATTTGTGGCTTCAAGATTTCTATTTGGAGTGCCACTTTTGCTTGCACTATTTATCCATAGGTGGCGACGTAGGCATTACTCAATGTATGAAAACATTGAAACTTTTTTGCTACACAACAATCTAAATCCTATTAGGTACGGATACAGAGAAATTAAGAAAATGAGCAGAGGTTACAAAGTTAAATTGGGGGAAGGAGGTTACGGATCTGTATACAAAGGAAAACTTCGAAGTGGGTCAGAAGTAGCAATAAAGATGTTGAAAAAATCGAAAGCTGATGGACAAGATTTTATGAATGAAGTGGCTAGCATTGGAAGAATACATCATGTGAATGTGGTACATCTCATTGGATATTGTGCTGAAGGACAAAAGCGTGCTCTAGTTTATGAGTACATGCCAAATGGTTCATTAGATAAATACATATTCTCCAAAGAGGAAAGTATCCCTTTAAGTTATGAGAAAACATATGAAATATCTCTTGGCATAGCTCGTGGAATTGCTTATCTTCATCAAGGCTGTGATGTGCAAATTCTACATTTTGATATTAAGCCTCATAATATTCTTCTAGATGATGACTTCATTCCAAAGGTTTCAGATTTTGGACTTGCAAAGCTATATCCTGTCGAAGATAAGTCTGTTGCTTTGACTATGGCTAGAGGAACTTTAGGTTACATGGCTCCAGAATTATTCTACAATAATGTTGGTGGAGTATTCAATAAGGCCGATGTGTATAGTTTTGGAATGCTTTTGATGGAAATGGGAAGTAGGAGAAGGAACTCAAATCCTCATGCAGAACATTCAAGCCAACAGTACTTCCCCTTTTGGATATATGATCAAATTAAAGATGAAAAAGAGACTCACATAGAAGATGCCTCAGAAGAGGATAAGATTATGGTGAAAAAAATGTATGTAGTTTCCCTTTGGTGTATACAATTAAAACCAAATGACCGTCCTTCAATGAAGAGAGTTGTGGAGATGCTTGAAGAAAAAGTTGAAAGTCTTGAAATGCCTCCTAAGCCTGTTTATTATCCCCCTGAAACAGTTGGACATGATTGTGGAGACAACTCAAACCAATCATCATGGAGTGGTTCAACTAGTTCTAGCAAAAATCTTGGCAAAACCAACTCTAATCATCCATGGGAGAGCAACGCTTGA 2076 0.3916 MVVLSSFCCSAQSLLARVAIIIVLFRQIHAAKDRPICAPSSYDPPGCGLPGFELDCVKNVTVFTLFSGKYHVHNISYQTYSIQLTDAGVEEDIACSIPRYFISTSNFTDIAPLTFWNEYMYGPSYWPPYVAFLNCSDRVSDDPRYVEVNGRLCDSGGHVYAVLASSGQFTVMDIKVGCHLKAATFTNNSHCNKVSYADIHECLHNGFSLYWVPVLCTDQCGKGVGCFVNQTTNQIECQQDYYCQVLGQDFEKIHCGNHDQILLYIVAILYYIASYAKYCIMGLMSTITRSPNYSGWEGNIISLAPILIFVASRFLFGVPLLLALFIHRWRRRHYSMYENIETFLLHNNLNPIRYGYREIKKMSRGYKVKLGEGGYGSVYKGKLRSGSEVAIKMLKKSKADGQDFMNEVASIGRIHHVNVVHLIGYCAEGQKRALVYEYMPNGSLDKYIFSKEESIPLSYEKTYEISLGIARGIAYLHQGCDVQILHFDIKPHNILLDDDFIPKVSDFGLAKLYPVEDKSVALTMARGTLGYMAPELFYNNVGGVFNKADVYSFGMLLMEMGSRRRNSNPHAEHSSQQYFPFWIYDQIKDEKETHIEDASEEDKIMVKKMYVVSLWCIQLKPNDRPSMKRVVEMLEEKVESLEMPPKPVYYPPETVGHDCGDNSNQSSWSGSTSSSKNLGKTNSNHPWESNA* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2057 691 SMART serkin_6 366 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g2057 691 Gene3D Phosphorylase Kinase; domain 1 341 438 - -
Pvu11g2057 691 Gene3D Transferase(Phosphotransferase) domain 1 439 644 - -
Pvu11g2057 691 Pfam Wall-associated receptor kinase galacturonan-binding 43 86 IPR025287 GO:0030247
Pvu11g2057 691 MobiDBLite consensus disorder prediction 644 691 - -
Pvu11g2057 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672|GO:0006468
Pvu11g2057 691 PANTHER RUST RESISTANCE KINASE LR10-RELATED 8 665 IPR045874 GO:0004672
Pvu11g2057 691 Pfam Protein kinase domain 368 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g2057 691 MobiDBLite consensus disorder prediction 658 691 - -
Pvu11g2057 691 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 8 665 - -
Pvu11g2057 691 ProSitePatterns Protein kinases ATP-binding region signature. 370 392 IPR017441 GO:0005524
Pvu11g2057 691 ProSiteProfiles Protein kinase domain profile. 364 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g2057 691 CDD STKc_IRAK 370 636 - -
Pvu11g2057 691 SUPERFAMILY Protein kinase-like (PK-like) 353 635 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2057 Pvu-Chr11 47460789 47464201 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g2057 303 691 Receptor kinase-like Gene Family AT4G18250 42.643 1.23e-99 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pvu11g2057 PK_Tyr_Ser-Thr 2.2e-47 CL0016