Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2055 ATGGTGGTCTTATCTTCTTTCTGCTGCTCTGCACAATCACTGCTTGCCCGTGTGGCTATCATTATTGTACTATTCCGGCAAATTCACGCTGCCAAGGATCGTCCAATCTGTGCTCCTTCTTCCTGTGGCAAAATTGGCAACATAAGTTATCCTTTCCGACTCAAAGACGACCCACCTGGTTGCGGGCTCCCAGGGTTCGAATTAGATTGCGTAAAGAATGTGACAGTCTTCACTTTGTTTTCAGGGAAATACCATGTTCACAATATCAGCTACCAAACATACAGCATCCAATTGACTGATGCAGGTGTTGAGGAGGACATTGCTTGCTCCATTCCTCGCTATTTCATCTCTACATCGAACTTCACTGACATTGCTCCACTAACTTTCTGGAATGAGTATATGTATGGGCCTTCTTATTGGCCTCCGTATGTAGCGTTTCTAAACTGTAGTGATCGAGTGAGTGATGATCCTCGATACGTGGAAGTGAATGGCAGACTTTGTGATTCTGGAGGCCATGTCTATGCCGTTCTTTCTTCTTCTGCTAAATTCACAATGATGGACATCAAGGTAGGCTGCCATTTAAAGGCTGCTACCTTTACAAACAATAGCCATTGCAACAAAGTTTCCTATGCTGATATCCATGAGTGCCTGCATAATGGGTTTTGGTTGAATTGGGTAACACCAGTTATTTGTACAGACCAATGTGGAAAGGGTGTAGGATGCTTCGTCAATCAAACAACTAATCAAATTGAATGTCAACAAGATTATTGCCAATATTGGAGATGGGAAGAAGATTTTATTTCATTAGGCCCTATTTCAATATTTGTGGCTGCAAGATTTCTATTTGGAGTGGCAATTTTGCTTGCACTATTTATCCATAGGTGGCGACGTAAGCATTACTCAATGTATGAAAACATTGAAACTTTTTTGCTACACAACAATCTAAATCCTATTAGGTACGGATACAGAGAAATTAAGAAAATGAGCAGAGGTTACAAAGTTAAATTGGGTGAAGGAGGTTTCGGATCTGTATACAAAGGAAAACTTCGAAGTGGATCAGAAGTAGCAATAAAGATGTTGAACAAAGCGAAAACTGATGGACAAGAGTTTATGAATGAAGTGGCTAGCATTGGAAGAATACATCATGTGAATGTGGTACATCTCATTGGATATTGTGCTGAAGGACAAAAGCGTGCTCTAGTTTATGACTACATGCCAAATGGTTCATTGGATAAATACATCTTCTCCAAAGAGGAAAGTGTCCCTTTAAGTTATGAGAAAACATATGAAATATCTCTTGGCATAGCTCGTGGGATTGCTTATCTTCATCAAGGCTGTGATGTGCAAATTCTACATTTTGATATTAAGCCTCATAATATTCTTCTAGATGATGACTTCATTCCAAAGGTTTCAGATTTTGGACTTGCAAAGTTATATCATGTCAAGGATACGTCAGTTGCTTTAACTATGGCTAGAGGAACTTTAGGTTACATGGCTCCAGAACTATTCTACAATAATATTGGTGGAGTATCCAATAAGGCCGATGTGTATAGTTTTGGAATGCTTTTGATGGAAATGGGAAGTAGAAGAAGGAACTCAAATCCTCATGCTGAACATTCAAGCCAACAGTACTTTCCCTTTTGGATATATGATCAAATTAAAGATGAAAAAGAGACTCACATAGAAGATGCCTCAGAAGAGGATAAGATTTTGGTGAAAAAAATGTATGTAGTTGCCCTTTGGTGTATACAATTGAAACCAAATGACCGTCCTTCAATGAAGAGAGTTGTGGAGATGCTTGAAGAAAAAGTTGAAAGTCTTGAAATGCCTCCTAAGCCTGTTTATTATCCTCCTGAAACAGTTGGACATGATTGTGGAGACAACTCAAACCAATCATCATGGAGTGGTTCAACTAGTTCTAGCGAAAATCTTGGCAAAACCAACACTAATCATCCATGGGAGAGCAACACTTTGACGAACAAGAAAATTGCTTAG 1995 0.3925 MVVLSSFCCSAQSLLARVAIIIVLFRQIHAAKDRPICAPSSCGKIGNISYPFRLKDDPPGCGLPGFELDCVKNVTVFTLFSGKYHVHNISYQTYSIQLTDAGVEEDIACSIPRYFISTSNFTDIAPLTFWNEYMYGPSYWPPYVAFLNCSDRVSDDPRYVEVNGRLCDSGGHVYAVLSSSAKFTMMDIKVGCHLKAATFTNNSHCNKVSYADIHECLHNGFWLNWVTPVICTDQCGKGVGCFVNQTTNQIECQQDYCQYWRWEEDFISLGPISIFVAARFLFGVAILLALFIHRWRRKHYSMYENIETFLLHNNLNPIRYGYREIKKMSRGYKVKLGEGGFGSVYKGKLRSGSEVAIKMLNKAKTDGQEFMNEVASIGRIHHVNVVHLIGYCAEGQKRALVYDYMPNGSLDKYIFSKEESVPLSYEKTYEISLGIARGIAYLHQGCDVQILHFDIKPHNILLDDDFIPKVSDFGLAKLYHVKDTSVALTMARGTLGYMAPELFYNNIGGVSNKADVYSFGMLLMEMGSRRRNSNPHAEHSSQQYFPFWIYDQIKDEKETHIEDASEEDKILVKKMYVVALWCIQLKPNDRPSMKRVVEMLEEKVESLEMPPKPVYYPPETVGHDCGDNSNQSSWSGSTSSSENLGKTNTNHPWESNTLTNKKIA* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2055 664 Pfam Wall-associated receptor kinase galacturonan-binding 37 100 IPR025287 GO:0030247
Pvu11g2055 664 CDD STKc_IRAK 336 602 - -
Pvu11g2055 664 SUPERFAMILY Protein kinase-like (PK-like) 319 601 IPR011009 -
Pvu11g2055 664 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 4 260 - -
Pvu11g2055 664 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 271 631 - -
Pvu11g2055 664 MobiDBLite consensus disorder prediction 624 664 - -
Pvu11g2055 664 SMART serkin_6 332 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g2055 664 PANTHER RUST RESISTANCE KINASE LR10-RELATED 4 260 IPR045874 GO:0004672
Pvu11g2055 664 PANTHER RUST RESISTANCE KINASE LR10-RELATED 271 631 IPR045874 GO:0004672
Pvu11g2055 664 Pfam Protein tyrosine and serine/threonine kinase 334 600 IPR001245 GO:0004672|GO:0006468
Pvu11g2055 664 ProSiteProfiles Protein kinase domain profile. 330 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g2055 664 Gene3D Transferase(Phosphotransferase) domain 1 405 610 - -
Pvu11g2055 664 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Pvu11g2055 664 MobiDBLite consensus disorder prediction 610 664 - -
Pvu11g2055 664 Gene3D Phosphorylase Kinase; domain 1 307 404 - -
Pvu11g2055 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2055 Pvu-Chr11 47443551 47447004 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g2055 37 619 Receptor kinase-like Gene Family AT5G38260 36.825 1.49e-110 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pvu11g2055 PK_Tyr_Ser-Thr 2.1e-48 CL0016