Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2044 ATGAGGAAGAAGCTCGATACCCGTTTCCCTGCTGCTCGGATAAAGAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCTGTTCCTGTTTTAGTTTCTAAAGCTCTAGAACTATTTCTGCAAGATCTTTGTGACCGTACTTATGAAATAACTCTTCAAAGAGGAGCAAAGACCATGAATTCATTGCATTTAAAACACTGTGTACAAAGCTATAATGTCTTTGACTTTCTGAGGGACGTTGTCAGCAGAGTTCCTGATTACGGTCATGGCCATGGCCATGGCCATGCTGAGGCTGGTGCTGATGATCGGGCCATTTCAAAAAGAAGGAAAGCTGTCGGTGATGATGGTAATGACAGTGATGAAGAGGCTAAGAGGGGCAAGATGCAAGAGGTGAGCCACACTGGCAGTACTGGTAGTAGGGGAAGAGGCCGAGGTAGAGGAAGAGGTCGTGGCCGAGGGCGACCACCTTTAGTAAGAGACACATATCATCAGGATGCTGAATCTGAGCCTTGCACTTCTGTTCAGCCGAGCAATCAACAAAGTGCAAACCCAAGTGTTGGAGTGGACAGTGGTTCTGAGCCAAAGGATTTACCAAAGGATTTACTAAAGGAGGAAAATATTGCAGTTCCTGTTGTAAGCACTGATTCCCTCCGGAATATTGATCTGAATGCCGTTACGAATGAAAACGATGACAAAAAGGCTAGCGTGGCAGCTGATACCTCATTGCCGGAACCTCCTTCAACAGAGGTTAAGCATGAAGAGATTCTGGGATGGCCCCTTTCTGATGTGGACAAGATGGCCATTGATTCTACACAGCTTGCCCAGCTGGCTAGGCCACTAGAAGAGGAGGAGGAAGATTATGACGAGGAGGAGGGGTAA 888 0.4673 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSRVPDYGHGHGHGHAEAGADDRAISKRRKAVGDDGNDSDEEAKRGKMQEVSHTGSTGSRGRGRGRGRGRGRGRPPLVRDTYHQDAESEPCTSVQPSNQQSANPSVGVDSGSEPKDLPKDLLKEENIAVPVVSTDSLRNIDLNAVTNENDDKKASVAADTSLPEPPSTEVKHEEILGWPLSDVDKMAIDSTQLAQLARPLEEEEEDYDEEEG* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2044 295 Coils Coil 276 295 - -
Pvu11g2044 295 MobiDBLite consensus disorder prediction 170 191 - -
Pvu11g2044 295 MobiDBLite consensus disorder prediction 112 208 - -
Pvu11g2044 295 SUPERFAMILY Histone-fold 4 91 IPR009072 GO:0046982
Pvu11g2044 295 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Pvu11g2044 295 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 293 - -
Pvu11g2044 295 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Pvu11g2044 295 PANTHER HISTONE SUPERFAMILY PROTEIN 1 293 - -
Pvu11g2044 295 MobiDBLite consensus disorder prediction 231 254 - -
Pvu11g2044 295 MobiDBLite consensus disorder prediction 112 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2044 Pvu-Chr11 47312021 47316564 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g2044 1 281 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.000 6.62e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pvu11g2044 CBFD_NFYB_HMF 2.2e-19 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g2044 11 47312021 47316564 Pvu11g2044 11 47312021 47316564 ECH