Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2026 ATGGGGATGAAAACAACAAAAATGATGATCCCTATTAGGGTTGTTCTTAGCTTCATGCTCCTCCTTTTCATCACAGCAAGTGCTCAAGTTCCAATTTACATGAACAATTTTTGTGACAACTCAACTTCTGTTAGCCCTTCATACAAAGCCAACGTTGACACCTTCCTCTCATGGGTAACCACAGACTCATACAAAGGAGATGGATACAACTACACCACTGTAAATAACAACAACCACAACAATGATGATGATGCTGTTTATGGATTGTACAGCTGCAGATACGATATCACAGGGTATTTTTGCCAGTTCTGCATCACCACTGCTTCAAAGGAACTCTCTCAAAGGTGTCCCAACACTGTAAGAGGTATCATATGGTATGATGTATGCATCATCCGTTACTCAAACCAAAATTTCATTGGCAAAGTTAGTTTAACCCCAATATGGAACACTACCGGAACCAGAAAAATCAAGGACTCATCAGAAGTTAAGAAAGCTGAGGATTCTATGCAGAGTTTGATCAGAAAAGCAACTGTAGAGAGCAAGACATTTTGGGCAGTGGAAGAGTTTGAATGGATTGACAATGAGAAAAGATATGGTTGGGTGCAGTGTGATAGAGTTATTGAAAATGATGAGTGTGGTGAGTGCTTGCATGCAACGTTAGACATATTTCCAGAGTGTTGTTCCACAAATGTACAGTGGGCAATTTTTGGTCCAAGCTGTAGCATCAGGATGGATGATCAAAATCTCTACCAGAATTCAGGTAACGGAGGTATTAGTAGTAAGTCAAGAAAGTTGATAATTTCCTTTAGTGTGTTGGGTGCTATAGCTCTACTATGTTTCAGTGTCTACTGCTTCTGGTACAGGAAAAGAGTAAGAAAAGATAAGATGATGCTTGATGAGGAAAAATTGAATGGAGATCTGCCTACAATACCACTAATAGCAGTTCTACATAGTACTAATAACTTTTCAGAAGCATTTAAATTAGGGGAAGGTGGATTTGGCCCCGTTTACAAGGGAATTCTACCAGATGGAAGACAAATTGCAGTGAAAAGGCTCTCAAAATTTTCTGGTCAGGGCTCACAGGAGTTCAAGAATGAAGTAATGTTTATAGCTAAATTGCAGCATCGTAACCTTGTGAGACTTTTGGGGTGCTGCTTGGAGGAAAATGAAAAGATACTAGTATATGAGTATATGTGTAATTCAAGCCTCGACTTTCACCTCTTTGGTGATGATGAGAAGAGAAAACAACTTGGTTGGAGACTAAGATTAAGCATTATCAATGGAATAGCAAGAGGTATTTTATATCTTCATGAGGACTCTCGACTCAAAGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTATTAGACGATGAGATGAATCCCAAGATATCAGATTTTGGATTGGCCAGGGCATTTGAAATAGGACAGAACCAAGCCAATACAAAACGTGTAGTGGGAACCTATGGATACATGGCTCCAGAGTATGCTATGGAAGGATTATTTTCTGTGAAATCAGATGTTTTCAGCTTTGGAGTTCTTGTCCTAGAAATCATATGTGGAAGAAAGAACAGTGGATTCCATCGAGCAGAGCATGGTCAAAGTCTTCTTTTATATGCTTGGAGCATATGGTGTGCAGGAAAATGTTTGGAATTGATGGATCCAGCACTGATAAAATCCTTCATAGCTAGTGAGGTTGTCAAGTGCTTACACATTGGATTGCTGTGTGTTCAACAAGATGCAGCAGATAGACCAACCATGTCTACGGTTGTTCTAATGCTAGGTAGTGAATCAATGGCCCTTCCAAAACCCAATCACCCTGCATTTTCTGTTGGAAAATTGACCTCTAAAGAAGCATCAGCTTCAAGAAGTACCAAGAATCTTTCTATTAATGATGTAACAGTCTCAACTGATTTAGCAAGGTGA 1926 0.393 MGMKTTKMMIPIRVVLSFMLLLFITASAQVPIYMNNFCDNSTSVSPSYKANVDTFLSWVTTDSYKGDGYNYTTVNNNNHNNDDDAVYGLYSCRYDITGYFCQFCITTASKELSQRCPNTVRGIIWYDVCIIRYSNQNFIGKVSLTPIWNTTGTRKIKDSSEVKKAEDSMQSLIRKATVESKTFWAVEEFEWIDNEKRYGWVQCDRVIENDECGECLHATLDIFPECCSTNVQWAIFGPSCSIRMDDQNLYQNSGNGGISSKSRKLIISFSVLGAIALLCFSVYCFWYRKRVRKDKMMLDEEKLNGDLPTIPLIAVLHSTNNFSEAFKLGEGGFGPVYKGILPDGRQIAVKRLSKFSGQGSQEFKNEVMFIAKLQHRNLVRLLGCCLEENEKILVYEYMCNSSLDFHLFGDDEKRKQLGWRLRLSIINGIARGILYLHEDSRLKVIHRDLKASNVLLDDEMNPKISDFGLARAFEIGQNQANTKRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVLVLEIICGRKNSGFHRAEHGQSLLLYAWSIWCAGKCLELMDPALIKSFIASEVVKCLHIGLLCVQQDAADRPTMSTVVLMLGSESMALPKPNHPAFSVGKLTSKEASASRSTKNLSINDVTVSTDLAR* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2026 641 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 638 - -
Pvu11g2026 641 SMART serkin_6 322 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g2026 641 SUPERFAMILY Protein kinase-like (PK-like) 308 594 IPR011009 -
Pvu11g2026 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Pvu11g2026 641 Gene3D Transferase(Phosphotransferase) domain 1 398 603 - -
Pvu11g2026 641 ProSiteProfiles Protein kinase domain profile. 322 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g2026 641 CDD STKc_IRAK 328 594 - -
Pvu11g2026 641 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 19 638 - -
Pvu11g2026 641 ProSiteProfiles Gnk2-homologous domain profile. 144 249 IPR002902 -
Pvu11g2026 641 ProSiteProfiles Gnk2-homologous domain profile. 29 138 IPR002902 -
Pvu11g2026 641 Gene3D - 31 138 IPR038408 -
Pvu11g2026 641 Gene3D - 145 248 IPR038408 -
Pvu11g2026 641 Gene3D Phosphorylase Kinase; domain 1 283 397 - -
Pvu11g2026 641 Pfam Salt stress response/antifungal 163 246 IPR002902 -
Pvu11g2026 641 Pfam Salt stress response/antifungal 43 136 IPR002902 -
Pvu11g2026 641 Pfam Protein tyrosine and serine/threonine kinase 327 591 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2026 Pvu-Chr11 47084720 47090521 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g2026 15 641 Receptor kinase-like Gene Family AT4G05200 39.763 2.58e-166 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pvu11g2026 PK_Tyr_Ser-Thr 8.8e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0160 5 1347215 1351873 Pvu11g2026 11 47084720 47090521 PCT