Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2025 ATGATCCCTATTAGGGTTAGTGTTAGCTTCTTGTTCCTCCTTTTCACCACAACAAGAGCTCAAGCACCAATTTACATGTACAATTTTTGTGAGAACTCAACTTCTGTTAGCCCTTCATACAAAGCCAACGTTGACACCCTCCTCTCATGGGTAACCACAGACTCAGACCAAAGTGATGGATACAACTACACCACTGTAAACAACAACAATGATGATGATGCTGTTTATGGATTGTACAGCTGCAGATACGACATCACAGGGTATTTTTGTCGGTTCTGCATCACCACTGCTGCCAGTGAACTCTCTCGGAGGTGTCCCAACGCTGTAAGAGCTATCATATGGTATGATATATGCATCATCCGTTACTCAAACCAGAGTTTCAATGGCAAAGTTAGTTTAACCCCAACATGGAATATTACAGGACCCAAAAAAATCAAGGATTCAGCAGAAGCTAAGAAAGTTGAGGATTCTATGGAGAGTTTGATTACAAAAGTAACCATAGATACCAAGAAGTTTTGGGCAGTGGATGAATTTGATTGGGTTGACAATGAGAAAAGATATGGTTGGGTGCAGTGTGACAGGGATATTCCAAGTGATGAGTGTGGTGAGTGTTTGCATGTACTGTTAGACATATTTCCACAGTGTTGTTCCACAAATGCACAGTGGGCAGTTTTTGGTCCAAGCTGTGGAATGAGGATGGATGATGAAAAGTTCTACCAAAGTTCAGGCAATGGAGGTGCTAGTAAGACAAGAAAGTTAATCATTTCCTCTAGTGTGTTGGGGTCTGTAGCTCTACTATGTTTCAGTGTCTACTGCTTCTGGTACAGGAAAAGAGTAAGAAAAGATAAGATGACGTTTGATGAGGAAAAATTGAATGGAGATCTGCCTACAATCCCATTAATCGCAGTTCTACATAGTACTAATAACTTTTCAGAAGAATCTATATTAGGGGAAGGTGGATTTGGCTCTGTTTACAAGGGAATTCTACCAGATGGAAGACAAATTGCAGTGAAAAGGCTCTCACAATTTTCTGGTCAGGGCTCACAGGAGTTCAAGAATGAAGTTATGTTTATAGCTAAATTGCAACATCGTAACCTTGTGAGACTTTTGGGGTGCTGCTTGGAGGAAAATGAGAAGATACTAGTATATGAGTATATGTGTAATGCAAGCCTCGACTTTTACCTCTTTGGTGATGATGAGAAGAGAAAGCAACTTGATTGGGGACTAAGATTAAGCATTATCAATGGAATAGCAAGAGGTATTTTATATCTTCATGAGGACTCTCGACTCAAAGTAATTCACAGAGATCTCAAAGCTAGCAATGTTCTATTAGACGATGAGATGAATCCCAAGATCTCGGATTTTGGATTGGCCAGGGCATTTGAAATAGGAGAGAACCAAGCCAAGACAAAACGAGTAGTGGGCACCTATGGATACATGGCTCCAGAGTATGCTATGGAAGGATTATTTTCTGTGAAATCAGATGTGTTCAGCTTTGGAGTTCTTGTCCTAGAAATCATTTGTGGAAGAAAGAACAGTGGATTCCATCGATCAGAACATGGTCAAAGTCTTCTTTTATATGCTTGGAGCATATGGTGTGCAGGAAAATGTTTGGAATTGATGGATCCAGCACTGATAAAATCCTTCATAGCTAGTGAGGTTGTCAAGTGCTTACACATTGGATTGCTGTGTGTTCAACAAGATGCAGCAGATAGACCAACCATGTCTACGGTTGTTCTAATGCTAGGAAGTGACACAATGGATCTTCCAAAACCCAATCACCCTGCATTTTCTGTTGGAAAATTGACCTCTAAAGAAGCATCAGCTTCAGAAAATTCCAAGAATCGTTCTATTAATGATGTAACAGTCTCAGCCGTTTTGGCAAGATAA 1890 0.4032 MIPIRVSVSFLFLLFTTTRAQAPIYMYNFCENSTSVSPSYKANVDTLLSWVTTDSDQSDGYNYTTVNNNNDDDAVYGLYSCRYDITGYFCRFCITTAASELSRRCPNAVRAIIWYDICIIRYSNQSFNGKVSLTPTWNITGPKKIKDSAEAKKVEDSMESLITKVTIDTKKFWAVDEFDWVDNEKRYGWVQCDRDIPSDECGECLHVLLDIFPQCCSTNAQWAVFGPSCGMRMDDEKFYQSSGNGGASKTRKLIISSSVLGSVALLCFSVYCFWYRKRVRKDKMTFDEEKLNGDLPTIPLIAVLHSTNNFSEESILGEGGFGSVYKGILPDGRQIAVKRLSQFSGQGSQEFKNEVMFIAKLQHRNLVRLLGCCLEENEKILVYEYMCNASLDFYLFGDDEKRKQLDWGLRLSIINGIARGILYLHEDSRLKVIHRDLKASNVLLDDEMNPKISDFGLARAFEIGENQAKTKRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVLVLEIICGRKNSGFHRSEHGQSLLLYAWSIWCAGKCLELMDPALIKSFIASEVVKCLHIGLLCVQQDAADRPTMSTVVLMLGSDTMDLPKPNHPAFSVGKLTSKEASASENSKNRSINDVTVSAVLAR* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2025 629 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 14 626 - -
Pvu11g2025 629 ProSiteProfiles Protein kinase domain profile. 310 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g2025 629 Gene3D - 138 238 IPR038408 -
Pvu11g2025 629 Gene3D - 23 127 IPR038408 -
Pvu11g2025 629 SUPERFAMILY Protein kinase-like (PK-like) 296 582 IPR011009 -
Pvu11g2025 629 Pfam Protein tyrosine and serine/threonine kinase 313 579 IPR001245 GO:0004672|GO:0006468
Pvu11g2025 629 Pfam Domain of unknown function (DUF3403) 584 629 IPR021820 GO:0004674
Pvu11g2025 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672|GO:0006468
Pvu11g2025 629 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
Pvu11g2025 629 Gene3D Transferase(Phosphotransferase) domain 1 386 591 - -
Pvu11g2025 629 Pfam Salt stress response/antifungal 152 234 IPR002902 -
Pvu11g2025 629 Pfam Salt stress response/antifungal 35 125 IPR002902 -
Pvu11g2025 629 ProSiteProfiles Gnk2-homologous domain profile. 22 127 IPR002902 -
Pvu11g2025 629 Gene3D Phosphorylase Kinase; domain 1 271 385 - -
Pvu11g2025 629 CDD STKc_IRAK 316 582 - -
Pvu11g2025 629 ProSiteProfiles Gnk2-homologous domain profile. 133 238 IPR002902 -
Pvu11g2025 629 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 14 626 - -
Pvu11g2025 629 SMART serkin_6 310 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2025 Pvu-Chr11 47070216 47078390 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g2025 10 629 Receptor kinase-like Gene Family AT4G05200 40.691 1.47e-173 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pvu11g2025 PK_Tyr_Ser-Thr 2.8e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0158 5 1335454 1339316 Pvu11g2025 11 47070216 47078390 PCT