Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2024 ATGCAATGGATAATGTTTCTCTTCCTCTTCAGTTTCGGTAATTGTTCTTTCCATAAAACAAGAAAAGTTACTGTGTCACTCAAGAACTTGAGCAGGTACTCCATGATGGTAACACAAACATGCTTTGATTTCTTGTTATTGATGAGTTTTGGAACACTAGTTACAAAGGCACAAACACAGATATATCTGGGAAGTAATTGCGAAAACACCTCCCAAGAGCCTTTCAGCACTGCATACCAAACCAATCTTGATAAGATGCTCACATGGATGTCCACTGATGCAGCCACAAGCAAAGGCTACAACCACACCAGCATAGGCATCAACACCACTGTATATGGCCTCTATGATTGCCGTGGTGATGTTGTTGGACACTTTTGTGAATTCTGTGTCTCCTTCGCAGCCAGAGAAGCTCCTAAACGCTGCCCCAATAGGGTATCTGCTATGGTGTGGTATGAGTACTGCATTCTAAGGTACTCTAATGAGAGCTTCTTTGGGAAAATTCTCACACACCCCACATGGCATGGGTTTGGAACAAAAAAGGTATCCAACATGGCAGAGGTTCTTAAAGGAGAAGGTTTTGTGAGAAGTTTGATCAGAAAAGCAACTGAGGAAACCAGCCAGTTGTACTATTTGGGTGGCTTCAATTTGAGTTCCACTCAGAGAAGGTATGGCATGGTGCACTGCAGCAGAGATCTCACAAATGAAGGTTGCAGACAGTGTTTGGAGGCTGTATTGGCACAAGTTCACAAATGTTGTGAACAAAAAGTAGGATGGTTTATTTGGTCTGGAACATGTATGATAAGGTATGATGATCAAATGTTCTACCTTCTTAACAACCAAACATCTTCACTTCCTGCTTCAAATCAGCAAACAGATAAGAAAAGGGGTGATAAGAGGTCAAAAATCTTAATCATTAGCATCAGTCTGATGGGGTCAATATTTCTACTGTGTTTGAGCTTATATCGCTTCTGGTTCAGGAGAAGAGTTAGAAAAGATGGGTTTCGTCTATCTTCGTTTCATAAAATTCAAACAGAGGAATCATGGACCACAGACCTGCGCATTATCCCACTAACTACAATTCTGCAGAGTACTGATAACTTTTCAGAAGCATGTAAATTAGGAGAAGGAGGATTTGGCAGTGTTTACAAGGGAATTCTAGCAGATGGAACACAAATTGCAGTCAAAAGGCTCTCAAAGTTTTCTGGTCAAGGCTCGGAGGAGTTTAATAACGAAGTCCTGTTTATAGCCAATTTGCAACATCGCAATCTTGTGAGACTTTTGGCATGTTGCTTGGAGGAAAACGAAAGCATACTAGTATATGAGTATTTGCAGAACAAAAGTTTAGACTTTCACCTCTTTGATGATGAGAAGAGAAAGCAGTTTGATTGGAAACTAAGATTAAGGATTGTCAATGGAATAGCAAGAGGTATTTTATACCTTCATGAGGACTCTAGAGTCACAGTAATTCATAGAGATCTCAAAGCAAGCAATGTTCTATTAGATCATGACATGAATCCCAAAATATCAGATTTTGGATTGGCAAGGGCATTTGAAATAGGACAAACACAGGCAAATACAAAACGAGTAATGGGAACTTATGGATACATGGCTCCAGAGTATGTCATGCAAGGACTATTTTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTTGTTCTGGAAATCATGTATGGGAGAAAGAACAGTGGATTGTATATGTCAGAACATGGTCAAACTCTTCTTTTATATGCTTGGAGAACATGGAGTGCAGGAAAATGTTTGGAAATGATTGATCCAATGCTGGAAAAATCCTTCATAGGAAGTGAAGTTGAGAGGTGTATACACATTGGTTTGTTGTGTGTTCAAGAAGATGCAAAAGATAGACCAACAATGTCTGATGTTGTTGTAATGCTTGCAAGTGATACAATGGTTCTTCCAAAACCAAAGCACCCTGCATTTTCAATTGGAATAATGGCCTCAGAGGAAGTTCATACATCAAAAAGTTCCAAGATTGTTTCCAATAGTGATCTAACAGTCTCTGTTTCTTTACCAAGGTGA 2058 0.395 MQWIMFLFLFSFGNCSFHKTRKVTVSLKNLSRYSMMVTQTCFDFLLLMSFGTLVTKAQTQIYLGSNCENTSQEPFSTAYQTNLDKMLTWMSTDAATSKGYNHTSIGINTTVYGLYDCRGDVVGHFCEFCVSFAAREAPKRCPNRVSAMVWYEYCILRYSNESFFGKILTHPTWHGFGTKKVSNMAEVLKGEGFVRSLIRKATEETSQLYYLGGFNLSSTQRRYGMVHCSRDLTNEGCRQCLEAVLAQVHKCCEQKVGWFIWSGTCMIRYDDQMFYLLNNQTSSLPASNQQTDKKRGDKRSKILIISISLMGSIFLLCLSLYRFWFRRRVRKDGFRLSSFHKIQTEESWTTDLRIIPLTTILQSTDNFSEACKLGEGGFGSVYKGILADGTQIAVKRLSKFSGQGSEEFNNEVLFIANLQHRNLVRLLACCLEENESILVYEYLQNKSLDFHLFDDEKRKQFDWKLRLRIVNGIARGILYLHEDSRVTVIHRDLKASNVLLDHDMNPKISDFGLARAFEIGQTQANTKRVMGTYGYMAPEYVMQGLFSVKSDVFSFGVLVLEIMYGRKNSGLYMSEHGQTLLLYAWRTWSAGKCLEMIDPMLEKSFIGSEVERCIHIGLLCVQEDAKDRPTMSDVVVMLASDTMVLPKPKHPAFSIGIMASEEVHTSKSSKIVSNSDLTVSVSLPR* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2024 685 SUPERFAMILY Protein kinase-like (PK-like) 341 638 IPR011009 -
Pvu11g2024 685 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 48 682 - -
Pvu11g2024 685 Gene3D Phosphorylase Kinase; domain 1 331 442 - -
Pvu11g2024 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 488 500 IPR008271 GO:0004672|GO:0006468
Pvu11g2024 685 SMART serkin_6 367 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g2024 685 CDD STKc_IRAK 373 638 - -
Pvu11g2024 685 ProSiteProfiles Protein kinase domain profile. 367 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g2024 685 Pfam Salt stress response/antifungal 67 160 IPR002902 -
Pvu11g2024 685 Pfam Salt stress response/antifungal 212 271 IPR002902 -
Pvu11g2024 685 ProSitePatterns Protein kinases ATP-binding region signature. 373 395 IPR017441 GO:0005524
Pvu11g2024 685 Pfam Protein tyrosine and serine/threonine kinase 371 637 IPR001245 GO:0004672|GO:0006468
Pvu11g2024 685 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 48 682 - -
Pvu11g2024 685 ProSiteProfiles Gnk2-homologous domain profile. 169 274 IPR002902 -
Pvu11g2024 685 Gene3D Transferase(Phosphotransferase) domain 1 443 645 - -
Pvu11g2024 685 ProSiteProfiles Gnk2-homologous domain profile. 61 163 IPR002902 -
Pvu11g2024 685 Gene3D - 59 163 IPR038408 -
Pvu11g2024 685 Gene3D - 178 274 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2024 Pvu-Chr11 47065760 47068779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g2024 50 685 Receptor kinase-like Gene Family AT4G05200 41.566 2.17e-170 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pvu11g2024 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g2024 11 47065760 47068779 Pvu5g0158 5 1335454 1339316 PCT