Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2022 ATGAGATCAATATGCTTTGCTTTCTGGTTACTGCTGAATTTCAGATCATTCGTTATTACAAAGGCTGAACAACCAGCAAACCTGGGAAGTAACTGTGAAAACACCACCCAGCAAACTCTCAGCAGTGCATACCAAACCAACCTTGATAGGATCCTCACATGGATACCCTCTGATGCAGCCACAAGTATTGGTTATAACCACACCACCATAGGCACCAATAGCTCTGTGTATGGCCTCTACGATTGTGGTGGTGACTTGGCTGGATTCTTTTGTCAATTTTGTGTTTCCACTGCTGTAAGAGAAGCCCCTCAGCTCTGCTCCAATAGGGTGTCTGCTGTGGTGTGGAATGATTACTGCGTTATTAGGTACTCAAATGAGGACTTCTTTGGGAAAGCTTTGACATACCCAACATGGCATACTGTTGGAACAAAAAACATATCGAACACGACAGAGATTCAGATAGGTGAGGCTTTTGTTAGAAGTTTGATCAGAAAATCAACTAATGAAACCAACCAGTTGTACTATAAGGAAGGGTTCAACTTGAGTGCCACTGAGAGTAGGTATGCAGTGGTGCAATGCACTAGAGATCTCACAAATGAAGGGTGCAGACAGTGTTTGGAGGTCATGCTCACTGAAGTTCCCAAATGTTGTGAACAACACATTCCATGGACGGTTTGGTCTGGAAGTTGTTTGATAAGGTATGATGATCATATGTTCTACTTGCTTAACACCCAACAACCTTCAGCCCCTGCGCCCAATGCACAAGATAAACAAGAGGGTAATAAAAGGTCAAAAACTTTGATCATTACCTTCAGTGTGATTGGGCCAATAATTGTACTATGTTTGAGCCTATACTGCTTCTGGCACAGGAAAAGGCTGATAAAAGGGCTTCCTCTTCCTTCATTTCGTAAGATTCAATCAGAGGAAATGTGGAACACAGACCTGCCTAGAATACCATTAATCACAATTCTACAGAGTACTGATAACTTCTCAGAAGCATCTAAACTAGGGGAAGGTGGATTTGGCCCCGTTTACAAGGGAACTCTACGTGACGGAAAGCAAATTGCAGTAAAAAGACTATCAAAATTTTCTGGTCAAGGCTCAGAGGAGTTCAATAATGAAGTAATGTTTATAGCTAAATTGAGGCATCGCAACCTTGTAAGACTTTTGGCATGTTGCTTAGAGGAAAATGAAAAGATACTTGTATACGAGTATTTGCCGAATAAAAGTCTCGACTTTCACCTATTTGATGTCGACAGAAGAAAACAATTCGATTGGAAACTAAGATTAAGCATTATCAATGGAATAGCAAGAGATTTTGGATTGGCAAGGGCATTTGAAGTAGGACAAAACCAGGCAAATACAAAACGAGTAATGGGAACCCTTGGATACATGGCTCCTGAGTATGCTATGGAAGGACTATTTTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTTGTTCTAGAAATCATTTGTGGGAGAAAGAATGGTGGATTCTACCTGTCAGATGGTCAAACTCTTATTTCATATGCTTGGAGAATGTGGTATGAAGGAAAATGTTTGGAGTTGATGGATCCAATGCTGGAAAAATCTTTTATAGAAGATGGAGTAGAGAGGTGCATACAGATTGGTCTGTTGTGTGTTCAAGAAGATGCAAGAGATAGACCAACCATGTCCGATGTTGTTGTAATGCAGGCGAGTGACACATTGGCCATTCCAAAACCCAAGCACTCAGCATTTTCAGTTGGAAGAACAGCCGCAGAGGAAGTCACTACATCAAGAAGTTTCAAGAATGATATAACAAGCTCTATTACTTTACCGAGGTAA 1830 0.4098 MRSICFAFWLLLNFRSFVITKAEQPANLGSNCENTTQQTLSSAYQTNLDRILTWIPSDAATSIGYNHTTIGTNSSVYGLYDCGGDLAGFFCQFCVSTAVREAPQLCSNRVSAVVWNDYCVIRYSNEDFFGKALTYPTWHTVGTKNISNTTEIQIGEAFVRSLIRKSTNETNQLYYKEGFNLSATESRYAVVQCTRDLTNEGCRQCLEVMLTEVPKCCEQHIPWTVWSGSCLIRYDDHMFYLLNTQQPSAPAPNAQDKQEGNKRSKTLIITFSVIGPIIVLCLSLYCFWHRKRLIKGLPLPSFRKIQSEEMWNTDLPRIPLITILQSTDNFSEASKLGEGGFGPVYKGTLRDGKQIAVKRLSKFSGQGSEEFNNEVMFIAKLRHRNLVRLLACCLEENEKILVYEYLPNKSLDFHLFDVDRRKQFDWKLRLSIINGIARDFGLARAFEVGQNQANTKRVMGTLGYMAPEYAMEGLFSVKSDVFSFGVLVLEIICGRKNGGFYLSDGQTLISYAWRMWYEGKCLELMDPMLEKSFIEDGVERCIQIGLLCVQEDARDRPTMSDVVVMQASDTLAIPKPKHSAFSVGRTAAEEVTTSRSFKNDITSSITLPR* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2022 609 ProSiteProfiles Gnk2-homologous domain profile. 26 128 IPR002902 -
Pvu11g2022 609 Gene3D Transferase(Phosphotransferase) domain 1 438 575 - -
Pvu11g2022 609 Gene3D - 26 128 IPR038408 -
Pvu11g2022 609 Gene3D - 137 239 IPR038408 -
Pvu11g2022 609 ProSiteProfiles Protein kinase domain profile. 330 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g2022 609 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 17 438 - -
Pvu11g2022 609 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 439 598 - -
Pvu11g2022 609 ProSiteProfiles Gnk2-homologous domain profile. 134 239 IPR002902 -
Pvu11g2022 609 SUPERFAMILY Protein kinase-like (PK-like) 315 567 IPR011009 -
Pvu11g2022 609 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 439 598 - -
Pvu11g2022 609 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 438 - -
Pvu11g2022 609 Gene3D Phosphorylase Kinase; domain 1 300 405 - -
Pvu11g2022 609 Pfam Salt stress response/antifungal 158 236 IPR002902 -
Pvu11g2022 609 Pfam Salt stress response/antifungal 32 125 IPR002902 -
Pvu11g2022 609 Pfam Protein tyrosine and serine/threonine kinase 334 435 IPR001245 GO:0004672|GO:0006468
Pvu11g2022 609 Pfam Protein tyrosine and serine/threonine kinase 439 563 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2022 Pvu-Chr11 47054691 47057647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g2022 6 609 Receptor kinase-like Gene Family AT4G05200 36.622 2.06e-139 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pvu11g2022 PK_Tyr_Ser-Thr 2.6e-12 CL0016