Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2012 ATGCATGCACCATGGTTTCTAACTGTGAGATCAATGTGCTTTGGTTTCTTGTTATGTTTGAGTTTCAGTTGTTTGAGTTATACACAGGCACAAACACCCATTTACCAGGGAAGTTACTGCCAAAACAGCACCCAAGAATCTCTCACCACTGCATACCAAACCAATCTTGAGAGAATCCTCTCATGGATGTCCTCAGATGCAGCCACAAGCAAAGGTTACAACTACACCAGCATAGGAAACAGCTCCACTGTGTATGGCCTCTACAATTGCCGTGGTAATGTGGTTGGATACTTTTGTCAATTCTGTGTCTCTAATGCTGCCAGAGAAGTTCGTCAGCACTGCCCCAATAGGGTGTCTGCTACAGTGATGTATGATTTCTGCATTCTGAGGTACTCAAATGAGAACTTCTTTGGGAAAATTCTTACATACCCAACATGGCATGCTGTTGGAACAAAAAACATTTACAACAAGGAAGAGACTAAGAAAGGTGAGGATTTTATGAGAGGCTTGATCAGAAAAGCAACTGTGGAGACCAACAAGTTGTACTACATGGATGGCTTCAATTTGAGTTTCACACAAGAAAGGTATGGCTTCGTGCAATGCAGTAGAGATCTCACAAATGGTGGGTGCAGAGAGTGTTTGGAGGCCATGTTAGCAGAAGTTCCCAAATTTTATGAGCAAAAATTAGGATGGTCCATTTGGTCTGGAACTTGTATGATAAAGTATGATGACTATATGTTCTACCTTCCTGAAACAGATAAAGATGGAGTTAACAAGAGGTCAAAAATCTTGATCATCAGCTTCTCTGTGATGGGGTCAATAACTCTACTATGTTTGGGTGTATATTTCTTTTGGAACAGAAGAAGAGATGGGATTCGGCTATCATCATTTCATAAAATTCAAACTGAGGAAACATTGAACACTGACCTGCCTATAATCCCATTAATCACAGTTCTGCAGAGTACTGATAACTTTTCAGAAGCATCTAAATTGGGGGAAGGTGGATTTGGCTCCGTTTACAAGGGAATTCTACCTGATGGAAGACAAATAGCAGTCAAAAGGCTGTCAAAATTTTCTGGACAAGGCTCAGAGGAGTTCAATAATGAAGTAATGTCTATAGCTAAATTGCAACATCGCAACCTTGTAAGACTCTTTGGATGCTGCTTGGAGGAAAATGAAAAGATACTTGTATACGAGTATATGCCAAACGCAAGTCTGTACTTTCACCTGTTTGACGATGAGAAAAGAAAACAACTTGATTGGAAACTAAGATTACGCATTATCAATGGAATAGCAAGAGGCCTTCTATATCTTCATGAGGACTCTCGACTCAGAGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTATTAGACCATGACATGAATCCCAAAATATCAGATTTTGGATTAGCAAGAGCATTTGAAATTGGACAAAACCAAGGAAATACAAAGCGAGTAATGGGCACTTAG 1473 0.3985 MHAPWFLTVRSMCFGFLLCLSFSCLSYTQAQTPIYQGSYCQNSTQESLTTAYQTNLERILSWMSSDAATSKGYNYTSIGNSSTVYGLYNCRGNVVGYFCQFCVSNAAREVRQHCPNRVSATVMYDFCILRYSNENFFGKILTYPTWHAVGTKNIYNKEETKKGEDFMRGLIRKATVETNKLYYMDGFNLSFTQERYGFVQCSRDLTNGGCRECLEAMLAEVPKFYEQKLGWSIWSGTCMIKYDDYMFYLPETDKDGVNKRSKILIISFSVMGSITLLCLGVYFFWNRRRDGIRLSSFHKIQTEETLNTDLPIIPLITVLQSTDNFSEASKLGEGGFGSVYKGILPDGRQIAVKRLSKFSGQGSEEFNNEVMSIAKLQHRNLVRLFGCCLEENEKILVYEYMPNASLYFHLFDDEKRKQLDWKLRLRIINGIARGLLYLHEDSRLRVIHRDLKASNVLLDHDMNPKISDFGLARAFEIGQNQGNTKRVMGT* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2012 490 Gene3D Phosphorylase Kinase; domain 1 290 400 - -
Pvu11g2012 490 Pfam Salt stress response/antifungal 40 133 IPR002902 -
Pvu11g2012 490 Pfam Salt stress response/antifungal 187 245 IPR002902 -
Pvu11g2012 490 SMART serkin_6 325 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g2012 490 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 21 490 - -
Pvu11g2012 490 Gene3D Transferase(Phosphotransferase) domain 1 401 490 - -
Pvu11g2012 490 SUPERFAMILY Protein kinase-like (PK-like) 300 490 IPR011009 -
Pvu11g2012 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Pvu11g2012 490 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 21 490 - -
Pvu11g2012 490 Pfam Protein kinase domain 326 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g2012 490 ProSiteProfiles Gnk2-homologous domain profile. 34 136 IPR002902 -
Pvu11g2012 490 ProSiteProfiles Gnk2-homologous domain profile. 142 247 IPR002902 -
Pvu11g2012 490 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Pvu11g2012 490 ProSiteProfiles Protein kinase domain profile. 325 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g2012 490 Gene3D - 146 247 IPR038408 -
Pvu11g2012 490 Gene3D - 34 136 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2012 Pvu-Chr11 46981720 46983546 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g2012 28 490 Receptor kinase-like Gene Family AT4G05200 40.244 3.23e-115 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pvu11g2012 Pkinase 1e-33 CL0016